PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010541171.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 294aa MW: 33282.6 Da PI: 4.7019

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010541171.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.3	5e-07	168	213	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r+RR+ri ++ +eL +l+P +Kl+ ae+ + A +Y+ Lq XP_010541171.1 168 QSIAARQRRRRIAEKTQELGKLIPGG-----QKLNTAEMFQAAAKYVVFLQ 213 57888*****************86.....7************98887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.44E-10	162	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.354	163	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.9E-10	164	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-4	168	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-7	169	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MSCLSYFSNW DPIQLQDCLT PDVDMFIPVN DSFLFQPKPQ PQQQHLCQEQ ASSFGFDPLG 60 SFSDSLLLPQ ETFCPNPNTD PLNLPQDLDS FFPAPKRQKI TEPSYQCNTL DHFANPNPNF 120 VDSYLDIVPE GSTTFPEFRI PDFPVAFDAG RADHTGCNNA KKTQLSAQSI AARQRRRRIA 180 EKTQELGKLI PGGQKLNTAE MFQAAAKYVV FLQAQVGILQ LMQSEMPQEN PNVEREIRAL 240 LASQTMQEKF SSEEVCLAPR KMVQTLAADE SIWKTPRMFQ DINRLLSAHE TDKF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010541171.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010541171.1	0.0	PREDICTED: transcription factor bHLH53-like
Swissprot	Q84RD0	5e-96	BH053_ARATH; Transcription factor bHLH53
TrEMBL	D7LH48	5e-95	D7LH48_ARALL; Predicted protein
STRING	XP_010541171.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4547	25	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34820.1	2e-89	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]