PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010541107.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 258aa    MW: 29209.2 Da    PI: 6.3147
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010541107.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.66.1e-1060102855
                     HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      E++RR+r N++++ Lr+++Pk +      Kl+  ++ +  + YIk+Lq
  XP_010541107.1  60 SEKNRRRRFNQRLFALRSVVPKiS------KLDRTSVIKDSIAYIKELQ 102
                     6*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.43352101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-1456128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-1458118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-1158107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.41E-959106No hitNo description
PfamPF000101.8E-760102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MENLGDEYNN YWETTMFFRN EELEYSSWAF EEALSGGSGG LSSPDVGTVT SPSASKTVVS  60
EKNRRRRFNQ RLFALRSVVP KISKLDRTSV IKDSIAYIKE LQEQEKKLEA EIRELESSII  120
FYRNPINGYR DHSLHQELMS DVRSKKMKQI IGSSTVQISP IEALEMKVMW MGEKRGVVII  180
TCNKERETMA GLCQVFESLN LKIITANFSS PLSGRLSATL FIEADEEERG ILEAKILTAI  240
AASNASNYSS HERNGKFI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010541107.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010541107.10.0PREDICTED: transcription factor bHLH27
SwissprotQ700E31e-89BH027_ARATH; Transcription factor bHLH27
TrEMBLR0F7Y59e-99R0F7Y5_9BRAS; Uncharacterized protein
STRINGXP_010541107.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128411829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.12e-86bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]