PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010541001.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NAC
Protein Properties Length: 462aa    MW: 51395.8 Da    PI: 7.0805
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010541001.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.45.9e-36461891128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........t 78 
                     lp+G++F+Ptd+el+ e+L++kv++k+++ +        +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+          
  XP_010541001.1  46 LPAGVKFDPTDQELI-EHLEAKVSAKDIKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqnecdlqgS 138
                     799************.99*********5553334444434666646**********.555666799******************85777776655 PP

             NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  XP_010541001.1 139 GETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 189
                     5778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-3842208IPR003441NAC domain
PROSITE profilePS5100533.3746208IPR003441NAC domain
PfamPF023653.6E-1647189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MNKSNPGSVA GSDLIDSKIE EHQLCGSMKC PSCGHKLDGK PDWVGLPAGV KFDPTDQELI  60
EHLEAKVSAK DIKSHPLIDE FIPTIEGEDG ICYTHPEKLP GVTRDGLSRH FFHRPSKAYT  120
TGTRKRRKIQ NECDLQGSGE TRWHKTGKTR PVMVNGKQKG CKKILVLYTN FGKNRKPEKT  180
NWVMHQYHLG THEEEREGEL VVSKIFYQTQ PRQCNWSSER SLNIAGEENT TRRDHSGTSG  240
SCSSREIVNV NRSDEVAGGS STVNVVSAAM AAGLPSYSMD QLGFVPFRKS FDEVGREAPA  300
HVTSEVDVTE QHHHHGSSSS SSHHMVHDHH HHQHRHQVAS TAAAFHVSQP THPMSTIISS  360
PSSLQHNIIE ESPYHHVPRI LLPGESFQTQ QEQHHGKMGG SRSASGLEEL IMGCTSSSSS  420
ASHHIKDDSS MANQQEAEWL KYSSFWPAPD TDNQDHHHQH HG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-124418913140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010541001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546025e-55AC254602.1 Capsella rubella clone CAP08-D12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010541001.10.0PREDICTED: uncharacterized protein LOC104814586
SwissprotQ9M0F80.0NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A078GYJ30.0A0A078GYJ3_BRANA; BnaA03g49460D protein
STRINGXP_010541001.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66352643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.10.0NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]