PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010540993.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 363aa    MW: 40707.6 Da    PI: 6.9162
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010540993.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.91.5e-07124144526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f++ G C+ Gd+C FaHg
  XP_010540993.1 124 ACPDFRK-GGCRKGDSCEFAHG 144
                     7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.0871108IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-5119145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.263120146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-6123146IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-5124144IPR000571Zinc finger, CCCH-type
SMARTSM003568.1154177IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.141154178IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MMIGETHRPH PMVHIPPWPV SDDHTATEMY SPAIGSPDGN MLEALAALQR YLPSNEPDPD  60
YDPDFSGPDS PVDAYSCDHF RMYEFKVRRC ARGRSHDWTE CPYAHPGEKA RRRDPRKYHY  120
SGTACPDFRK GGCRKGDSCE FAHGVFECWL HPARYRTQPC KDGVNCRRRV CFFAHSPDQL  180
RILPQQSPDR VDCFDGSSPI RHSCAMPFQF SLSPVSGSPP VSPRADSEST QSLSRSFGSS  240
SVNDVVASLR NLQLNKVKSL PSSWSTQMRC YPSGFGSPRG SVLGPGVRSL PTTPTRPGIG  300
YLDIWDKGLE EEPAMERVES GRELRARMFE RLSKENCMER VDPDPDQNPG EAPDVGWVSE  360
LVK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010540993.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010540993.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G20.0C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLV4P4C30.0V4P4C3_EUTSA; Uncharacterized protein
STRINGXP_010540993.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.10.0C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]