PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

ERF

Protein Properties

Length: 191aa MW: 21028.7 Da PI: 8.7524

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010540820.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.5	1.7e-18	49	98	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++aa+++++g XP_010540820.1 49 SFRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDAAALAIKG 98 69**998.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	8.93E-21	48	108	No hit	No description
Pfam	PF00847	1.8E-12	48	98	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.194	49	106	IPR001471	AP2/ERF domain
SMART	SM00380	1.4E-34	49	112	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.7E-31	49	107	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.2E-21	49	107	IPR016177	DNA-binding domain
PRINTS	PR00367	5.4E-10	50	61	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.4E-10	72	88	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MHTHQSPLAM ESARNRRKKP NVKKREKDEA SNAKDSRDEI RKGVSKHPSF RGVRMRQWGK 60 WVSEIREPRK KSRIWLGTFS TPEMAARAHD AAALAIKGGG AHLNFPDLAC LLPRPASSHP 120 KDIQAAAAAA AEVAEPPQSP ASTVTSSPLS AAVADDAFTD LPDLLFDDVT HKIDGFWDSL 180 TYEDPFFLDS C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-16	38	106	2	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010540820.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010540820.1	1e-139	PREDICTED: ethylene-responsive transcription factor ERF039-like
Swissprot	Q9ZQP3	3e-67	ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBL	A0A398A487	6e-70	A0A398A487_BRACM; Uncharacterized protein
STRING	XP_010540820.1	1e-138	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2492	23	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16750.1	3e-55	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]