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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010540601.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ARF | ||||||||
Protein Properties | Length: 809aa MW: 89598.8 Da PI: 6.4757 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.4 | 2.6e-23 | 128 | 229 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD v+F +++ XP_010540601.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLIAGDAVLFI--WND 218 99*****************************86555544..8************************************************..788 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ XP_010540601.1 219 KNQLLLGIRRA 229 8889****997 PP | |||||||
2 | Auxin_resp | 117.2 | 1.4e-38 | 254 | 337 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+ eFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g++dldpvrWp+S+Wrs+k XP_010540601.1 254 AAHAAATNSRFTIFYNPRASPCEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTIMGINDLDPVRWPHSHWRSVK 337 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.09E-47 | 114 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-40 | 122 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.90E-21 | 127 | 228 | No hit | No description |
Pfam | PF02362 | 2.4E-21 | 128 | 229 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.379 | 128 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-23 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.6E-33 | 254 | 337 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 5.7E-8 | 661 | 761 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 4.32E-7 | 666 | 748 | No hit | No description |
PROSITE profile | PS51745 | 24.501 | 673 | 757 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 809 aa Download sequence Send to blast |
MRLSSAGFNT QAHEGEKRVL NSELWHACAG PLVSLPLVGS RVVYFPQGHS EQVAASTNKE 60 VDAHIPNYPS LQPQLICQLH NVTMHADVET DEVYAQMTLQ PLNPQDEQKD PYIPAELGAL 120 TRQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFT QQPPAQELIA RDLHDNEWKF 180 RHIFRGQPKR HLLTTGWSVF VSAKRLIAGD AVLFIWNDKN QLLLGIRRAN RPQTVMPSSV 240 LSSDSMHLGL LAAAAHAAAT NSRFTIFYNP RASPCEFVIP LAKYVKAVYH TRVSVGMRFR 300 MLFETEESSV RRYMGTIMGI NDLDPVRWPH SHWRSVKVGW DESTAGEKQP RVSLWEIEPL 360 TTFPMYPSPF PLRLKRPWPP GLPSFHVSSI KEDDLGMMSS PLMWDRGLQT LNFQGFGLNP 420 WTMMQQPRLD VYQTMAASAL QDTNFSTRPV PENQQPQSLQ TQTPANNLLS QQTQFVSGSQ 480 SIPPLCHHLS FSDTNCIGNN PMTSSIVSPL HTLLGNFPQD ESSSSHQMLN LTRSSSAMAS 540 SGWPSKRAAV DSSFQSSGSR NNSNNNTECV MDQLPPFPGR ECLAEQDGNT DPHSHLLFGV 600 SIDSSSLLMQ SGVSNLNAIG IENDSTALPF LSSNTVSIND FSSNLAVMPS SCIDESGFLQ 660 SSDNVGSENP QSTTFVKVYK SGSFGRSLDI SKFSSYHELR SELARMFGIE GRLEDPMRSG 720 WQLVFVDREN DVLLLGDDPW PEFVNSVWCI KILSPQEVHR MGKRGIEILS SGPSVRKIPN 780 GGGCEDFGNG HDPRNLGGSI ASVAGSFDY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-160 | 16 | 358 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010540601.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010540601.1 | 0.0 | PREDICTED: auxin response factor 6-like isoform X1 | ||||
Refseq | XP_010540602.1 | 0.0 | PREDICTED: auxin response factor 6-like isoform X1 | ||||
Swissprot | Q9ZTX8 | 0.0 | ARFF_ARATH; Auxin response factor 6 | ||||
TrEMBL | A0A3P6EVZ4 | 0.0 | A0A3P6EVZ4_BRAOL; Auxin response factor | ||||
STRING | XP_010540601.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1344 | 28 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |