PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010540079.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NF-YA
Protein Properties Length: 307aa    MW: 34153.1 Da    PI: 9.5404
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010540079.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA83.73e-26141202158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpyl.....heSRhkhAlrRpRgsgGrF 58 
                     +ep++VNaKQy++Il+RRq+Rak+e+++kl +ksrk  +     +eSRh hAl+RpRgsgGrF
  XP_010540079.1 141 NEPVFVNAKQYHAILRRRQQRAKQEAQNKL-IKSRKLPMfmaggYESRHIHALKRPRGSGGRF 202
                     59****************************.88887544356668*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005218.0E-29139205IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115230.265140205IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.2E-21142202IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.3E-17143165IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.3E-17179202IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MTESLILKVD SMPKHLQNTK QMSFQDHDSS STQSTGQSYT EVASRGDSKL SRQISFSTQS  60
GYGEARDKAF VDNVRSASPT GFPDIHFAPS QAHFSLHCAE PQFGGYLTAT YAPQATVTMC  120
SPQMVGFVPS RVPLPVNLME NEPVFVNAKQ YHAILRRRQQ RAKQEAQNKL IKSRKLPMFM  180
AGGYESRHIH ALKRPRGSGG RFLNTKKLKE SEHGGAEQQM EGNKNMSRSR FEIHHHLENS  240
KEHHGSTTSC SDITSASDSA DIFGNPEFQL PDYPSEITLT RATNFRDRSG EMHGGGGGNV  300
HHFSVRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-14141213268NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010540079.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019058082.10.0PREDICTED: nuclear transcription factor Y subunit A-3
SwissprotQ93ZH21e-109NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLF4IEZ61e-109F4IEZ6_ARATH; Nuclear factor Y, subunit A3
STRINGXP_010540079.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33492762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.22e-88nuclear factor Y, subunit A3