PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010539957.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

WRKY

Protein Properties

Length: 493aa MW: 53378.6 Da PI: 6.5151

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010539957.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.9	5.8e-30	184	243	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+ ed +++++tYeg+Hnh+ XP_010539957.1 184 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCPEDMSILVTTYEGTHNHT 243 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.5E-31	169	243	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-26	177	243	IPR003657	WRKY domain
PROSITE profile	PS50811	26.624	179	245	IPR003657	WRKY domain
SMART	SM00774	1.4E-35	184	244	IPR003657	WRKY domain
Pfam	PF03106	3.0E-26	185	242	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MDEAKEENRR LKLSLSKIMR DYENLQTEYN QMVQQQSKKS QEGHAEEGDG DDGGGGEFNK 60 ESEEFVSLSL GRRKSPTSSG SMRKDGKKKG LVMAEKNAEE HDGEGLSIAL MDYQAMNPYG 120 KEEKEETLEI NYNNNDDNQN QNQNLESSYG LKNYGDDHDE ELLQQNIVKK PRVSVRARCD 180 APTMNDGCQW RKYGQKIAKG NPCPRAYYRC TVAPSCPVRK QVQRCPEDMS ILVTTYEGTH 240 NHTLSISATP MASATSAAAS ILLSGSSSSS SSSATTATAN LHGLNFYISG NSSRPKSSSY 300 LSPSNSLSSL GHPTITLDLT MSNSSLSSSS SSSLPSSQPF ISLLKNFSSS SPSGIPNSFA 360 QRSYPYTNLS FSTNNVNSPV TSTNTLYWAG HGGGVRTTYG NTVLGSTHQV PYHLIQNNRT 420 ESGPSDPFGR SYSQPIQSNV TKNMNQASLP AETIAAIATD PNFQSALANV LSSIIVSGDG 480 NVDLIKGQGE KNP

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MDEAKEENRR LKLSLSKIMR DYENLQTEYN QMVQQQSKKS QEGHAEEGDG DDGGGGEFNK  60
ESEEFVSLSL GRRKSPTSSG SMRKDGKKKG LVMAEKNAEE HDGEGLSIAL MDYQAMNPYG  120
KEEKEETLEI NYNNNDDNQN QNQNLESSYG LKNYGDDHDE ELLQQNIVKK PRVSVRARCD  180
APTMNDGCQW RKYGQKIAKG NPCPRAYYRC TVAPSCPVRK QVQRCPEDMS ILVTTYEGTH  240
NHTLSISATP MASATSAAAS ILLSGSSSSS SSSATTATAN LHGLNFYISG NSSRPKSSSY  300
LSPSNSLSSL GHPTITLDLT MSNSSLSSSS SSSLPSSQPF ISLLKNFSSS SPSGIPNSFA  360
QRSYPYTNLS FSTNNVNSPV TSTNTLYWAG HGGGVRTTYG NTVLGSTHQV PYHLIQNNRT  420
ESGPSDPFGR SYSQPIQSNV TKNMNQASLP AETIAAIATD PNFQSALANV LSSIIVSGDG  480
NVDLIKGQGE KNP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	5e-19	172	244	2	73	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010539957.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010539957.1	0.0	PREDICTED: probable WRKY transcription factor 61
Swissprot	Q8VWV6	1e-120	WRK61_ARATH; Probable WRKY transcription factor 61
TrEMBL	A0A078GAF5	1e-137	A0A078GAF5_BRANA; BnaA09g44440D protein
TrEMBL	A0A3P5YSN3	1e-137	A0A3P5YSN3_BRACM; Uncharacterized protein
STRING	XP_010539957.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12663	17	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18860.1	2e-94	WRKY DNA-binding protein 61

Publications ? help Back to Top
Gao R,Liu P,Yong Y,Wong SM Genome-wide transcriptomic analysis reveals correlation between higher WRKY61 expression and reduced symptom severity in Turnip crinkle virus infected Arabidopsis thaliana. Sci Rep, 2016. 6: p. 24604 [PMID:27086702]