PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010539850.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

C2H2

Protein Properties

Length: 438aa MW: 48063.5 Da PI: 9.8278

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010539850.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.7e-05	209	231	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ +nL+ H+ + H XP_010539850.1 209 ACSQCGEVFPKLENLEIHQAVrH 231 6******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	208	231	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.891	208	236	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	7.19E-22	233	434	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.7E-8	236	434	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MALLTFPPEK SEPPQPQKQQ PPAPKRKKRE TQTQKPQKQT QKKKKKKPQK PPSSWDQFKN 60 LITCKQIEGS RVHDPSKNSQ TGPHTCPPPS SSPSKLITSS CGSICSFRDV AHGNTRVVHR 120 ADNSPEPGNP SHDSESRLLT RKSTHHRSSS SRSLTSGSTR SNGRESYTSS SSTTTTSFRG 180 MQFRKLSGCY ECHMIVDPSR YAITPRVCAC SQCGEVFPKL ENLEIHQAVR HAVSELGSED 240 SGRNIVEIIF KSSWLKKDSP MCKIERILKV HNTQRTIQRF EDCRDAVKAR ALQTPRKDAR 300 CAADGNELLR FHCTTLGCTL GSSSSALCSA IPGCGVCTLI RRGFGPGGVR TTASSGRAHD 360 SVRDVGSGQR AMLVCRVIAG RVKRPVVEDQ AAEEENCGGA YDSLAVNGGV YSNLEELLVF 420 NPRAILPCFV VIYNVLES

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MALLTFPPEK SEPPQPQKQQ PPAPKRKKRE TQTQKPQKQT QKKKKKKPQK PPSSWDQFKN  60
LITCKQIEGS RVHDPSKNSQ TGPHTCPPPS SSPSKLITSS CGSICSFRDV AHGNTRVVHR  120
ADNSPEPGNP SHDSESRLLT RKSTHHRSSS SRSLTSGSTR SNGRESYTSS SSTTTTSFRG  180
MQFRKLSGCY ECHMIVDPSR YAITPRVCAC SQCGEVFPKL ENLEIHQAVR HAVSELGSED  240
SGRNIVEIIF KSSWLKKDSP MCKIERILKV HNTQRTIQRF EDCRDAVKAR ALQTPRKDAR  300
CAADGNELLR FHCTTLGCTL GSSSSALCSA IPGCGVCTLI RRGFGPGGVR TTASSGRAHD  360
SVRDVGSGQR AMLVCRVIAG RVKRPVVEDQ AAEEENCGGA YDSLAVNGGV YSNLEELLVF  420
NPRAILPCFV VIYNVLES

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	46	KRKKRETQTQKPQKQTQKKKKKK
2	26	46	KKRETQTQKPQKQTQKKKKKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010539850.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010539850.1	0.0	PREDICTED: uncharacterized protein LOC104813789
TrEMBL	D7KT60	0.0	D7KT60_ARALL; Zinc finger family protein
STRING	XP_010539850.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1916	28	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-165	C2H2-like zinc finger protein