PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010539579.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family LBD
Protein Properties Length: 154aa    MW: 16700.1 Da    PI: 8.6035
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010539579.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260143.65.8e-4581071100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +Ca+Ck+lrrkC+kdC++apyfpae+++kf  vhk+FGasnv+k+l++lpe++r+da+s+++yeA+ar+rdPvyG+vg i++lq+q+++l+a+la
  XP_010539579.1   8 PCAGCKLLRRKCVKDCIFAPYFPAEESQKFLTVHKIFGASNVTKMLQELPESQRTDAVSAMAYEANARVRDPVYGCVGAISSLQSQVDSLQAQLA 102
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     l+++e
  XP_010539579.1 103 LAQAE 107
                     *9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.0977108IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-438105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MKERGKGPCA GCKLLRRKCV KDCIFAPYFP AEESQKFLTV HKIFGASNVT KMLQELPESQ  60
RTDAVSAMAY EANARVRDPV YGCVGAISSL QSQVDSLQAQ LALAQAELLQ FRLLHHHRPP  120
PPSSVAAVNS PTSKHLSAVN LSCDGGAGDS LWSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-48811111114LOB family transfactor Ramosa2.1
5ly0_B2e-48811111114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010539579.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinin. {ECO:0000269|PubMed:17485849}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010539579.11e-112PREDICTED: LOB domain-containing protein 3-like
SwissprotQ9SA513e-62LBD3_ARATH; LOB domain-containing protein 3
TrEMBLA0A0S3SK412e-62A0A0S3SK41_PHAAN; Uncharacterized protein
STRINGXP_010539579.11e-111(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.13e-45LOB domain-containing protein 4
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]