PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010539432.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | AP2 | ||||||||
Protein Properties | Length: 542aa MW: 58765.8 Da PI: 8.3108 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48 | 3.2e-15 | 223 | 282 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_010539432.1 223 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 282 57*******************666664477446*************************98 PP | |||||||
2 | AP2 | 47.1 | 5.7e-15 | 325 | 376 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_010539432.1 325 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 376 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.1E-12 | 223 | 282 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.62E-22 | 223 | 292 | No hit | No description |
SuperFamily | SSF54171 | 1.5E-17 | 223 | 292 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.8E-29 | 224 | 296 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.23 | 224 | 290 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.7E-16 | 224 | 291 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-6 | 225 | 236 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.26E-25 | 325 | 386 | No hit | No description |
Pfam | PF00847 | 7.1E-10 | 325 | 376 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-18 | 325 | 386 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.045 | 326 | 384 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.9E-34 | 326 | 390 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-18 | 326 | 384 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-6 | 366 | 386 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0040019 | Biological Process | positive regulation of embryonic development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 542 aa Download sequence Send to blast |
MMNNFDSSSA SLNNDSSSSS SSASSSHKNW LAFSLSNNIN CLNPSQNPNL ALPISSSPSL 60 SADHRHHHLS LFHAFATNPD APVKAQLQGR SRDGASGGSE TSPVILSVLS GGPKLEDFLG 120 GSRATTAVPP PLTTQVPLQP PAGVVFSGEP APPYATEIYD SELKYIAASL FGNFSGGSTG 180 HSSEGTIVHQ QPQQQQQQQN QNRRVSEASG PKKNVETFGQ RTSIYRGVTR HRWTGRYEAH 240 LWDNSCRREG QSRKGRQVYL GGYDKEEKAA RAYDLAALKY WGPTTTTNFP ISNYEAELEE 300 MKQMTRQEFV ASLRRKSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ 360 EEAAEAYDIA AIKFRGLNAV TNFDISRYDV KSIASCNLPI GGLMANKSKT SSSDKAVDFP 420 NPPSPGPVAI FPTGIPVVKS DSSADHYWSN VLGFQSNPRG EIRNDIINNF VEEGCNGNST 480 LGLSSGMALA PSTTTMTTGN DVNNGTEEYG GNMNWIHDNV SHSYQTARSN LSGLQTPIFG 540 ME |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010539432.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010539432.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 0.0 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | R0EWC3 | 0.0 | R0EWC3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010539432.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11583 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-176 | AINTEGUMENTA-like 5 |
Publications ? help Back to Top | |||
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