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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010539366.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | WRKY | ||||||||
Protein Properties | Length: 668aa MW: 72566.6 Da PI: 4.9442 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.1 | 6.6e-32 | 270 | 327 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK vkgse+prsYY+Ct+++C v+kkvers+ +++v+ei+Y+g Hnh+k XP_010539366.1 270 EDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCLVTKKVERSR-EGHVTEIIYKGAHNHPK 327 8****************************************.***************85 PP | |||||||
2 | WRKY | 99.6 | 1.9e-31 | 474 | 532 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC v+k+ver+++d k v++ Y g+Hnh+ XP_010539366.1 474 LDDGYRWRKYGQKVVKGNPNPRSYYKCTGPGCLVRKHVERASHDFKSVITSYDGKHNHD 532 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 23.433 | 264 | 328 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 9.4E-28 | 267 | 328 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-25 | 267 | 328 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-35 | 269 | 327 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-24 | 270 | 326 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 8.7E-35 | 459 | 534 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-27 | 466 | 534 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.459 | 469 | 534 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.5E-35 | 474 | 533 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.5E-23 | 475 | 532 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 668 aa Download sequence Send to blast |
MTGFDDNVAV MDEWLPSSPN PRAIFTAMSG QEENSKPVLE IELSLNHGYV KEDCLQSNNL 60 PFGEEKPGLG ERIASRAGGF NAPKLNTDNI PSPCLTISSP GLSPATLLES PVFLSNPLAP 120 TSPTTGKFSF FPGGSSYMSP SDPSDKTKDE LFDDIDASFT FHPVSRSSSS IIPGNTASVC 180 HVSQQSFPST EISINYGNCN NSQTVEGVEL GSQDVETVNL HGKFPGTSAE IHNSGKDVDP 240 GEVRTLDDAQ DEEQRRKGGD LVVAGGAPAE DGYNWRKYGQ KLVKGSEYPR SYYKCTHPNC 300 LVTKKVERSR EGHVTEIIYK GAHNHPKPPP NRRAAAIGSS GTSLLDLQID GTEQSEQQQS 360 SMGRDDSPWL VAQQAGTNNE NGEETSPDST TGFESGQMQV HGGTHRYDDD DDDDDGANDE 420 DEDDDHVMHG SEGDETEPKR RKLEEAYAEE MSGATRAIRE PRVVVQTTSD VDILDDGYRW 480 RKYGQKVVKG NPNPRSYYKC TGPGCLVRKH VERASHDFKS VITSYDGKHN HDVPMARNSS 540 NHGGSGGSSA QTQVHQPEPR SRFERPVTSN PTFVRPFSFQ PRLGPPPPGG FSFACLGQTG 600 LHNLAMPSFP VHPYMAGTSQ QAVGEPGLMM LPTRSTDPKV EPVSDTGLVG LSGSSSIYRQ 660 FMSRLPQI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-34 | 270 | 534 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-34 | 270 | 534 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010539366.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010539365.1 | 0.0 | PREDICTED: probable WRKY transcription factor 2 | ||||
Refseq | XP_010539366.1 | 0.0 | PREDICTED: probable WRKY transcription factor 2 | ||||
Refseq | XP_010539367.1 | 0.0 | PREDICTED: probable WRKY transcription factor 2 | ||||
Swissprot | Q9FG77 | 0.0 | WRKY2_ARATH; Probable WRKY transcription factor 2 | ||||
TrEMBL | A0A1J3CZN8 | 0.0 | A0A1J3CZN8_NOCCA; Putative WRKY transcription factor 2 | ||||
STRING | XP_010539365.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 0.0 | WRKY DNA-binding protein 2 |
Publications ? help Back to Top | |||
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