PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010538911.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | NAC | ||||||||
Protein Properties | Length: 568aa MW: 63301.5 Da PI: 4.6275 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 156.4 | 1.2e-48 | 17 | 143 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +pGfrFhPtdeelvv+yLk+k+ +++l++ +vi vd+yk++P +Lp + +k+++++w+fF++r++ky++g r++r t++g Wk tgkd++++ XP_010538911.1 17 APGFRFHPTDEELVVYYLKRKICRRRLRV-NVIGVVDVYKWDPAELPgHsLLKSGDRQWFFFTPRSRKYPNGARSSRGTANGHWKVTGKDRTIVY 110 69***************************.99***************6347788999************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kktLv+y+grap+ge+tdWvmhey++ XP_010538911.1 111 -NSRAVGIKKTLVYYRGRAPNGERTDWVMHEYTM 143 .999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 52.671 | 16 | 166 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.37E-56 | 16 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.5E-25 | 18 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 568 aa Download sequence Send to blast |
MADSSPDSCF KGGRFCAPGF RFHPTDEELV VYYLKRKICR RRLRVNVIGV VDVYKWDPAE 60 LPGHSLLKSG DRQWFFFTPR SRKYPNGARS SRGTANGHWK VTGKDRTIVY NSRAVGIKKT 120 LVYYRGRAPN GERTDWVMHE YTMDEEELGK CQNAKDYYAL YKLYQKSGAG PKNGEQYGAP 180 FQEEEWADDD KEDTNNVAEP VSVAIKSDSF ACVDKDVLTQ DDIEELLRGI ADAPPVSSRQ 240 IDNLPYVVPQ VNSEEDVQNT FVNTSSGGVL ICEQIGEFMP NSQPYNRRMS FGSLVSANSF 300 EATEVTSATP KTMEAAPLVF EKEDYIEMDD LLISDLDASA VEKPLQPLNT DGFSGLSEFD 360 LLFHDVAMSF DMENTCQETA PCPSFTNYLD CNTTDQKQHY PNHQFQQQTV QSQLNSLTDP 420 SAVDSTQLVG DLWLQEETAD HFDRQQYYSE TFASPLSGVI QGSTDTTTGP STEDQGDQDC 480 PGARSQFSNA LWGFMESIPS TPASACEGPL NRTFVRMSSF SRIRVTAKAD GAPTVTGRKP 540 KKAIRNRGFL LLSIVGAVCA IICCVYSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-46 | 18 | 143 | 17 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010538911.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010538911.1 | 0.0 | PREDICTED: NAC domain-containing protein 17-like | ||||
Swissprot | Q9XIC5 | 0.0 | NAC17_ARATH; NAC domain-containing protein 17 | ||||
TrEMBL | A0A087HSM1 | 0.0 | A0A087HSM1_ARAAL; Uncharacterized protein | ||||
STRING | XP_010538911.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2812 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 0.0 | NAC domain containing protein 17 |