PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010538885.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 543aa    MW: 60432.9 Da    PI: 9.9518
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010538885.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.12.7e-2948132187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+ +e+laL+++r++m++ +r++ lk+plWe+vs+k++e g++rs+k+Ckek+en++k+yk++ke +++r+++  + +++f qlea
  XP_010538885.1  48 RWPMEETLALLRIRSDMDSIFRDATLKAPLWEDVSRKLSELGYKRSAKKCKEKFENVQKYYKRTKEARGGRQDG--KAYKFFAQLEA 132
                     8********************************************************************98555..56******985 PP
2trihelix107.21.1e-33398483187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k ev aLi++r+ +e r+++++ k+plWee+s++m++ g++rs+k+Ckekwen+nk+ykk+ke++kkr +e+ +tcpyf++l+a
  XP_010538885.1 398 RWPKVEVFALINLRSGLEPRYQEAAPKGPLWEEISSAMKRMGYNRSAKRCKEKWENINKYYKKVKESNKKR-PEDAKTCPYFHRLDA 483
                     8*********************************************************************8.99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00717245107IPR001005SANT/Myb domain
CDDcd122032.03E-2447112No hitNo description
PROSITE profilePS500906.64448105IPR017877Myb-like domain
PfamPF138371.7E-2048133No hitNo description
PROSITE profilePS500906.934391455IPR017877Myb-like domain
SMARTSM007170.0056395457IPR001005SANT/Myb domain
CDDcd122033.75E-28397462No hitNo description
PfamPF138377.4E-24397484No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MDQGGGGGGE VVEEASPISS RPPANFEELM RFSAADYDGG GSSSSGIRWP MEETLALLRI  60
RSDMDSIFRD ATLKAPLWED VSRKLSELGY KRSAKKCKEK FENVQKYYKR TKEARGGRQD  120
GKAYKFFAQL EALNAATAAA NATAPSTLNV VPLSVANPIQ TPSSSPFSAF PPPPPPAVGG  180
VTFSSHSSST DSGMGSDDDD DDLDMDVDAA GPSSRKRKRK RGHRHRGGSS SNSKLMDFFG  240
GLVREVLQKQ AAMQRSFIEA LEKREQERID REEAWKRQEM FRLAREQELL AQDRAASASR  300
DSAILSLIQK ITGHTIQLPP PPPQLWPPPP TAAAAKPAPP PFRKMKHTHH QHSRASETHN  360
VQSQSPPIMA IPQQQIPPQM PEKHHDQVGG SSDPASSRWP KVEVFALINL RSGLEPRYQE  420
AAPKGPLWEE ISSAMKRMGY NRSAKRCKEK WENINKYYKK VKESNKKRPE DAKTCPYFHR  480
LDALYSKKDQ TSSPFSTSRT PESVKVQTHL SASISDQKRK EEHMEESTQE GVFREGGAEK  540
KTL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19098KRSAKKCKE
2214219RKRKRK
3214220RKRKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010538885.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010538885.10.0PREDICTED: trihelix transcription factor GTL1-like isoform X2
TrEMBLA0A397Y2Y60.0A0A397Y2Y6_BRACM; Uncharacterized protein
TrEMBLA0A397Y8400.0A0A397Y840_BRACM; Uncharacterized protein
TrEMBLM4FFY60.0M4FFY6_BRARP; Uncharacterized protein
STRINGXP_010538886.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.16e-53GT-2-like 1