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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010538837.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ARF | ||||||||
Protein Properties | Length: 636aa MW: 71936.3 Da PI: 6.6951 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 69.7 | 4e-22 | 117 | 217 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f kvlt sd++++g +++ +k+a+e+ + + +++l+ d+ g++W++k+i+r++++r++lt+GW+ Fv+ ++L +gD++vF + + XP_010538837.1 117 FSKVLTASDTSTHGGFSVLRKHATEClppldmtQ--PIPTQELVASDLLGNEWKFKHIFRGQPRRHLLTTGWSTFVSLKRLVAGDTFVFL--RGE 207 88****************************9543..444558************************************************..449 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++el+v+++ XP_010538837.1 208 NGELRVGIRH 217 9999***986 PP | |||||||
2 | Auxin_resp | 111.2 | 1e-36 | 243 | 321 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 a ha++t++ F+v+Y+Pr+ s+F+++++k+++a+++k+svGmRfkm+fe+eds+err+sGtvvgv+d+++ +W++S+Wr+L XP_010538837.1 243 ARHAIHTQTRFTVYYKPRT--SQFIISLNKYLEAMNNKFSVGMRFKMRFEGEDSPERRFSGTVVGVKDCSS-HWKDSEWRCL 321 679***************6..9**********************************************887.*********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.22E-35 | 106 | 246 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.6E-38 | 112 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.98E-18 | 115 | 216 | No hit | No description |
Pfam | PF02362 | 5.7E-20 | 117 | 217 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-18 | 117 | 219 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.801 | 117 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.3E-33 | 243 | 321 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.1E-12 | 495 | 604 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 2.16E-13 | 510 | 592 | No hit | No description |
PROSITE profile | PS51745 | 26.092 | 516 | 599 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 636 aa Download sequence Send to blast |
MANRGDDGGG GGYLYEELWK LCAGPLVDIP RRNEKVYYFP QGHMEQLEAS TNEDLNKMEP 60 LFNLPSKILC RVMNVILQAE KETDEVYAQI TLIPIGTQVD DEHTCPPEPQ KATVHSFSKV 120 LTASDTSTHG GFSVLRKHAT ECLPPLDMTQ PIPTQELVAS DLLGNEWKFK HIFRGQPRRH 180 LLTTGWSTFV SLKRLVAGDT FVFLRGENGE LRVGIRHAAR QQISMPSSVI SGQSLHLGVL 240 ATARHAIHTQ TRFTVYYKPR TSQFIISLNK YLEAMNNKFS VGMRFKMRFE GEDSPERRFS 300 GTVVGVKDCS SHWKDSEWRC LRVQWDEPTS IQRHDNVSPW EIEPFVPSTN ITQSVVPKNK 360 RPRQASEVSG LDLGSTRPNL WSSTLTQSHE FGQSCITSQH CYRDAAEETK SVSGWLMNCY 420 SVPPTTKSTN DQMGFPVEEK KHEMVTSYRL FGIDLMSKSA ATEKTGNMLT VNIANSTLEA 480 VSDQKSEVSK VSEEKKQEHA QASPKEVQSK QNSSNRSRTK VQMQGVGVGR AVDLTVVEGY 540 DQLFEELEKL FDIRCELRTR DRWEIVYTDG EGDMMLVGDD PWHEFCNMVK RIFIWSKEDV 600 KKMTPGSKLP LFIPEGRDDQ TMTMLASSDS ADTNTR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-162 | 2 | 345 | 3 | 355 | Auxin response factor 1 |
4ldw_A | 1e-162 | 2 | 345 | 3 | 355 | Auxin response factor 1 |
4ldw_B | 1e-162 | 2 | 345 | 3 | 355 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010538837.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010538837.1 | 0.0 | PREDICTED: auxin response factor 9-like | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | V4P5Z3 | 0.0 | V4P5Z3_EUTSA; Auxin response factor | ||||
STRING | XP_010538837.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2764 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | auxin response factor 9 |