PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010538825.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 318aa    MW: 35322.6 Da    PI: 5.7239
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010538825.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.92.4e-29148207258
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                     dDgynWrKYGqK++ g++fprsYYrCt++   +C ++k+v+rs+ dp+v+e+tY+g+H++
  XP_010538825.1 148 DDGYNWRKYGQKDILGARFPRSYYRCTYRntqNCLATKQVQRSDGDPTVFEVTYRGTHTC 207
                     8***************************98899*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.8E-28144207IPR003657WRKY domain
SuperFamilySSF1182901.16E-25146208IPR003657WRKY domain
SMARTSM007742.7E-40147209IPR003657WRKY domain
PROSITE profilePS5081122.033148205IPR003657WRKY domain
PfamPF031066.7E-27148207IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MESMHMLSWD PRTLISELIH GMEAAKQLRS QIGESPASAP VAETNEILVR RIVTSYEKAL  60
LMLNWSRSPP VQPITPAATV SPVKNPGIIP ESPASLNESP RSEEILDGGS KESNLQGYNF  120
NSKKRKMMPK WTEQVRISPE RGLDGPQDDG YNWRKYGQKD ILGARFPRSY YRCTYRNTQN  180
CLATKQVQRS DGDPTVFEVT YRGTHTCCPQ AIPSPAKQVA KKPEPTGNYQ KDLLDNLRSN  240
LTVRTEGLDD AFSFPATSFY DCDFGVGGFC HVSGSDPTDY LGLISANTST GSSPIFHVDF  300
PFDPTVEIDA GFPTFLQE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-191472051674Disease resistance protein RRS1
5w3x_D5e-191472051674Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010538825.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010538825.10.0PREDICTED: probable WRKY transcription factor 53 isoform X2
SwissprotQ8H0Y81e-115WRK41_ARATH; Probable WRKY transcription factor 41
TrEMBLR0GW301e-122R0GW30_9BRAS; Uncharacterized protein
STRINGXP_010538824.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-118WRKY family protein
Publications ? help Back to Top
  1. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]