PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010538516.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

WRKY

Protein Properties

Length: 333aa MW: 36682.1 Da PI: 6.4534

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010538516.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	84.8	8.3e-27	181	234	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++pr Ct+++C+vkk+vers +dp+vv++tYeg+Hnh+ XP_010538516.1 181 EDGYRWRKYGQKAVKNSPYPR----CTTQRCNVKKRVERSYQDPTVVITTYEGQHNHP 234 8***************996....******************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-28	165	236	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-23	172	236	IPR003657	WRKY domain
PROSITE profile	PS50811	26.636	175	236	IPR003657	WRKY domain
SMART	SM00774	7.4E-32	180	235	IPR003657	WRKY domain
Pfam	PF03106	2.3E-19	181	234	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MSNETKDMYN YLYASSYLYE DDHKHDHKII NPHDSVQGPS AYGNFIPTSF NDCLHSSSAD 60 YESLEKAFGL FPSSPEVFSS IYQEDNDVKQ YRHDEGGNIG AATESIRVSV SCNSSNEADH 120 PDESCRIRRK REAMAGGGGG DEEDCGGECS KKAVKAKKSE ETKRKEPRVA FMTKSEVEHL 180 EDGYRWRKYG QKAVKNSPYP RCTTQRCNVK KRVERSYQDP TVVITTYEGQ HNHPIPTNLR 240 GSSAAGMFSG TSADPRTLAH DFLMRRTAEG LVHGGGAAAL THGYGQSQSG GGGGDDDSVN 300 VNPSSQQHSG FSQGSDYGLL KEILPSLFFK HEP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-23	171	236	8	77	Probable WRKY transcription factor 4
2lex_A	5e-23	171	236	8	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010538516.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010538516.1	0.0	PREDICTED: probable WRKY transcription factor 28 isoform X2
Swissprot	Q8VWJ2	1e-100	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	A0A0D3DET2	2e-98	A0A0D3DET2_BRAOL; WRKY transcription factor
TrEMBL	A0A3P6ER93	2e-98	A0A3P6ER93_BRAOL; WRKY transcription factor
STRING	XP_010538515.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18170.1	2e-85	WRKY DNA-binding protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]