PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010538480.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GATA
Protein Properties Length: 502aa    MW: 55579.4 Da    PI: 8.0208
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010538480.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.78.9e-15741135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  XP_010538480.1  7 CCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 41
                    99**************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.0E-7153IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-10544No hitNo description
CDDcd002023.38E-15661No hitNo description
Gene3DG3DSA:3.30.50.101.5E-11741IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.7E-12741IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF139191.2E-7270371IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MGKQGPCCHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLANYTPLHA RAEAEDNEDQ  60
RVQRLKGVPV NKNKEMKMLK RKSNQENAMV KRASSSEFYH GFKKVVDEDA SNRSSSGSAI  120
SNSESCAQFG SADGSEFTGP AQSNVWDTSV PCKRRTCVGR PKPSSVEKLR KDLYSILQEQ  180
QSSCFSGSSE EDLLFENETP MVSVEIGHGS VLMRHPHSVG REEESEASSL SVENRSSMNE  240
AYSHSGKSIC NGAAKAPNFG GQAIQQEQLK RTKSQNEKQQ ILGCHSSPLC TIDLMDVFNF  300
DEFMGQFRDD EKRQLMKLLP QIDSVNFPDS LRSMFESAQF KENFPLFQQL VADGVFGLSS  360
SPGAKLEDRK MLKKLALSDL TKSHLVESYY QLKEGKNGTV GSSTTPSRIP NSNASNNLIG  420
ISRLSESQSH KITETRAVMR SPKRVVMKMK PNQEIKEKGF VRKGLGFERD GYEGDGDGYE  480
HDLLLDVPLN GSFPQAELLP QP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010538480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010538480.10.0PREDICTED: GATA transcription factor 26-like
SwissprotQ8W4H10.0GAT26_ARATH; GATA transcription factor 26
TrEMBLR0F9D00.0R0F9D0_9BRAS; Uncharacterized protein
STRINGXP_010538480.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.30.0GATA transcription factor 26