PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010538452.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family LSD
Protein Properties Length: 145aa    MW: 15834.8 Da    PI: 4.7873
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010538452.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD141.71.9e-135882125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    Cg+Cr lLsYP G+++V+C++C+t+
  XP_010538452.1 58 CGSCRRLLSYPQGSKYVKCSCCQTI 82
                    ***********************97 PP
2zf-LSD145.41.3e-1496120125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     C +Cr+lL+YP+GApsVRC++C  V
  XP_010538452.1  96 CDNCRVLLMYPYGAPSVRCSSCSSV 120
                     **********************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.9E-175585IPR005735Zinc finger, LSD1-type
PfamPF069438.6E-115882IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.0E-1293121IPR005735Zinc finger, LSD1-type
PfamPF069433.1E-1296120IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MREREEAPKE KEEATPQQAE DDEEGPPPGW ESAVIPPPSL PPSAAAAADV SEIAQMVCGS  60
CRRLLSYPQG SKYVKCSCCQ TINLVLEAHQ VGQVNCDNCR VLLMYPYGAP SVRCSSCSSV  120
TDIRENNKRP PWSEQQGQPK TSRAV
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010538452.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010538452.11e-102PREDICTED: protein LOL2
SwissprotO654261e-59LOL2_ARATH; Protein LOL2
TrEMBLM4DWK82e-61M4DWK8_BRARP; Uncharacterized protein
STRINGXP_010538452.11e-102(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136112226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.11e-49lsd one like 2