PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

ERF

Protein Properties

Length: 187aa MW: 20846.3 Da PI: 7.0782

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010538410.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.3	7.7e-18	45	94	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g XP_010538410.1 45 SFRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALAIKG 94 69**998.******843...6********************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	8.0E-12	45	94	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.4E-31	45	103	IPR001471	AP2/ERF domain
SMART	SM00380	6.9E-37	45	108	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.339	45	102	IPR001471	AP2/ERF domain
CDD	cd00018	4.17E-31	46	104	No hit	No description
PRINTS	PR00367	5.2E-10	46	57	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.56E-21	46	103	IPR016177	DNA-binding domain
PRINTS	PR00367	5.2E-10	68	84	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MQQHQPAMAS ERMIRKNPNK KRREKDDGDG DTDSREQRGV SERTSFRGVR MRQWGKWVSE 60 IREPRKKSRI WLGTFSTPEM AARAHDVAAL AIKGGGAHLN FPELACHLPR PSSSDPKDIR 120 AAAAAAAAEL LRSPESTVTS SPSLTSVADD AFSDLPDLFL DDLTHKINGF WDSLPYGEEE 180 PFFLANQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-16	38	102	6	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	19	24	KKRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00436	DAP	Transfer from AT4G16750	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010538410.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010538410.1	1e-136	PREDICTED: ethylene-responsive transcription factor ERF039-like
Swissprot	Q9SUK8	2e-67	ERF39_ARATH; Ethylene-responsive transcription factor ERF039
TrEMBL	D7LIJ5	7e-71	D7LIJ5_ARALL; Uncharacterized protein
STRING	XP_010538410.1	1e-136	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2492	23	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16750.1	2e-56	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]