PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010538390.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bZIP
Protein Properties Length: 396aa    MW: 41867.1 Da    PI: 6.3234
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010538390.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.26.8e-22291353163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L +eN+ L+ e+++lk ++++l +++
  XP_010538390.1 291 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAETLVEENTNLRTEVNKLKSLCEELLAKN 353
                     89*********************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077776.0E-301100IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.6E-38136259No hitNo description
Gene3DG3DSA:1.20.5.1701.8E-16286349No hitNo description
SMARTSM003381.2E-19291355IPR004827Basic-leucine zipper domain
PfamPF001707.6E-20291353IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.495293356IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.16E-11294350No hitNo description
CDDcd147026.99E-23296346No hitNo description
PROSITE patternPS000360298313IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MGSSEADKSA KEKEPKTPPS SAPATSQEPS SAATAGMATP DWSGFQAYSP MPPHGFVASS  60
PQAHPYMWGV QHMMPPYGTP PHPYVAMYPP GGIYAHPSLP PGSYPFSPYA MPSPNGIAEA  120
SVSGIEGDAK QSEGKEKLPI KRSRGSLSSL NMDIGKNIEP GQTSGASANG VYSKSAESAT  180
EGTSEGSDSN SQNDSGTRQD SKEAEAASQN GGSGHGLQNG SATAALVTTV PIMPISAGPT  240
TNLNIGMDYW GAHTSPSIPG MHGKVSSAQV PGVVAPGSRD GAQSLVWLQD ERELKRQRRK  300
QSNRESARRS RLRKQAECDE LAQRAETLVE ENTNLRTEVN KLKSLCEELL AKNSSLKNQL  360
MEFPSLKGVN SDRNDQEPNN TTTDRDVQTN VTNGGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1307313RRSRLRK
2307314RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010538390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010538390.10.0PREDICTED: bZIP transcription factor 16-like
SwissprotQ501B20.0BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A178VPW60.0A0A178VPW6_ARATH; BZIP16
STRINGXP_010538390.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37012557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.10.0basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]