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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010538385.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | G2-like | ||||||||
Protein Properties | Length: 356aa MW: 40098.7 Da PI: 7.7086 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.2 | 3.3e-32 | 193 | 246 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ XP_010538385.1 193 PRMRWTTTLHARFVHAVQLLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 246 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.15E-15 | 190 | 246 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.0E-28 | 191 | 246 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-23 | 193 | 246 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.2E-7 | 194 | 245 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MELFPAQPDL SLQIHPPDRK LTSTWQRRPA EEAGDLDLGF WRRALEPSDS KTDSSTEPNS 60 SPLSRFLPNC NGSDALNSFQ FQTREKEQVF QEQQNQELRH GVLLIQDLNF LRPIRGVPLY 120 QNPPPPQCFP FDPSSPCVNN LSACTNSGLQ NPNYHPNHHL QHRHHHHHHR GLMTNNQSRL 180 MPRFPAKRSM RAPRMRWTTT LHARFVHAVQ LLGGHERATP KSVLELMDVK DLTLAHVKSH 240 LQMYRTVKTT DKAAVSSGQS DVCENGSSGD NSDDWISSRD SGKHGRGLWC NSSGEVLLHG 300 MPNDTVGENT LPSQKEMDPK CSSYERISSE ERSSSSIVSA TSPSQPNLEF TLGRPQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 6e-17 | 194 | 248 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-17 | 194 | 248 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-17 | 194 | 248 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-17 | 194 | 248 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010538385.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010538385.1 | 0.0 | PREDICTED: probable transcription factor KAN2 | ||||
Swissprot | Q9C616 | 1e-110 | KAN2_ARATH; Probable transcription factor KAN2 | ||||
TrEMBL | A0A3P6FHU3 | 1e-125 | A0A3P6FHU3_BRAOL; Uncharacterized protein | ||||
STRING | XP_010538385.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5387 | 28 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32240.1 | 1e-103 | G2-like family protein |
Publications ? help Back to Top | |||
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