PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010538382.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 376aa    MW: 39488.7 Da    PI: 8.1111
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010538382.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.2e-0885109126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC+ f+  GtC+y  +C+FaH+
  XP_010538382.1  85 FKTKLCCKFRT-GTCPYPTNCNFAHS 109
                     69*********.*************8 PP
2zf-CCCH19.51.8e-06162187126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     yk + C+ f+    C+yGd+C+F+H+
  XP_010538382.1 162 YKGRHCKKFYTEEGCPYGDSCTFMHD 187
                     77888********************7 PP
3zf-CCCH42.69.9e-14254279126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ +  tG+C++G++C+FaHg
  XP_010538382.1 254 WKTRICNKWEITGYCPFGAKCHFAHG 279
                     8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.7E-882115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-1482117IPR000571Zinc finger, CCCH-type
SMARTSM003560.001484110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.62984111IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-585109IPR000571Zinc finger, CCCH-type
SMARTSM003560.12161188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.751161189IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-9161188IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-7161188IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-17248283IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-9250284IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-9253280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178253281IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-11254279IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MSHRRDSGGD VVHVIPTNNP PENWLPIPGD SAVWATEDDY NRVWAVNPDS SGDTAPPSKK  60
TRGLSPSSSS TAASNRAKAI GKMFFKTKLC CKFRTGTCPY PTNCNFAHSV EELRRPPPNW  120
QDIVAAHGDE KSAIVTTIAA ERREEFQIPS LVSSVTESGR SYKGRHCKKF YTEEGCPYGD  180
SCTFMHDEAS RNRESVAISL GPGGYGGGGG GGGGGGGGGG GSGGPGGNGG GGGSVSADAV  240
SGGSGAQNLK PSNWKTRICN KWEITGYCPF GAKCHFAHGA AELHRYGGGL VEGEARDGSS  300
AAPDAKQMGP NPKGPVDITT ILPSGVPHSE VSYHASVTSQ RHSSIVTQKP GIRTLQKWKG  360
PEKISRIYGD WIDDIE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010538382.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010538382.10.0PREDICTED: zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM31e-171C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A0D3CDQ11e-179A0A0D3CDQ1_BRAOL; Uncharacterized protein
STRINGXP_010538382.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-169C3H family protein