PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010538268.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 850aa    MW: 93372.1 Da    PI: 6.1219
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010538268.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-181977357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_010538268.1 19 KYVRYTPEQVEALERVYAQCPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77
                    6789*****************************************************97 PP
2START170.79.5e-541733792205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ ++tl vi +g  g+++l 
  XP_010538268.1 173 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAISRNCSGIAARACGLVSLEPM-KVAEILKDRQSWFRDCRCVDTLSVIPTGngGTIELL 266
                     7899******************************************************.8888888888************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187
                     +++++a+++l++ Rdf+++Ry+ +l +g++v++++S  +    p+    +vRae+l Sg+li+p+++g+s +++v+hvdl++++++++lr+l++s
  XP_010538268.1 267 YMQMYAPTTLAAaRDFWTLRYSTSLDDGSYVVCERSMAQAIGGPTpPMTFVRAERLSSGFLIRPCEGGGSILHIVDHVDLDAWSVPEVLRPLYES 361
                     ******************************************99878889********************************************* PP

                     HHHHHHHHHHHHTXXXXX CS
           START 188 glaegaktwvatlqrqce 205
                     + + ++k+++a+l++ ++
  XP_010538268.1 362 SKILAQKMTTAALRHVRQ 379
                     *************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-18977IPR009057Homeodomain-like
PROSITE profilePS5007115.6611478IPR001356Homeobox domain
SMARTSM003891.1E-151682IPR001356Homeobox domain
PfamPF000462.9E-161977IPR001356Homeobox domain
CDDcd000869.17E-171979No hitNo description
SuperFamilySSF466897.27E-171982IPR009057Homeodomain-like
CDDcd146861.26E-571110No hitNo description
PROSITE profilePS5084825.633163389IPR002913START domain
CDDcd088752.35E-72167381No hitNo description
SuperFamilySSF559616.18E-33172382No hitNo description
Gene3DG3DSA:3.30.530.201.5E-18172370IPR023393START-like domain
SMARTSM002344.9E-50172380IPR002913START domain
PfamPF018522.3E-51173379IPR002913START domain
PfamPF086709.1E-52705849IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 850 aa     Download sequence    Send to blast
MMAHTMNLES PEKGMDSSKY VRYTPEQVEA LERVYAQCPK PSSLRRQQLI RECPILSNIE  60
PKQIKVWFQN RRCREKQRKE AARLQTVNRK VSAMNKLLME ENDRLQKQVS QLVYENGYMK  120
NQLHTASGTT TDNSCESVVV SGQQQQQQHQ QLKQNPTQHH QRDANNPAGL LSIAEETLAE  180
FLSKATGTAV DWVQMIGMKP GPDSIGIVAI SRNCSGIAAR ACGLVSLEPM KVAEILKDRQ  240
SWFRDCRCVD TLSVIPTGNG GTIELLYMQM YAPTTLAAAR DFWTLRYSTS LDDGSYVVCE  300
RSMAQAIGGP TPPMTFVRAE RLSSGFLIRP CEGGGSILHI VDHVDLDAWS VPEVLRPLYE  360
SSKILAQKMT TAALRHVRQI AQETNGEVQY GGGGRQPAVL RTFSQRLSRG FNDAVNGFSA  420
DGWSPIVSNG SDDVTIMINS SPGKFVGNQF GNSLFPSFGE GVLCAKASML LQNVPPAVLV  480
RFLREHRSEW ADHGVDAYSA ACLRTNPFSV PCARACGFPS SQVILPLAQT IEHEEFLEVV  540
RLEGHAFSPE NMGLAQDMYL LQLCSGTDET AVGGCAQLIF APIDESFADD AALLPSGFCI  600
IPLEHKTTPD GPLATRTLDL ASALEGSTRE ASAEAERSGY NHRSVLTIAF QFTFDSHSRD  660
NVASMARQYV RSVVGSIQRV ALAIAPSLGS NLGPFPLPTS PEALTLVRWI SQSYRIHTGS  720
DLFLDDSQSG EALLKQLWNH SDAILCCSLK TNASPVFTFA NQAGLDMLET TLVALQDMIL  780
DKTLDESGRK ALCSEFAKIM QQGYAHLPGG ICASSMGRPV SYDQATVWKV LDDDEANHCL  840
AFMFVNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010538268.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010538268.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14
SwissprotO042910.0ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14
TrEMBLV4M7290.0V4M729_EUTSA; Uncharacterized protein
STRINGXP_010538268.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42562653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  3. Müller CJ, et al.
    PHABULOSA Mediates an Auxin Signaling Loop to Regulate Vascular Patterning in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 956-70
    [PMID:26637548]
  4. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  5. Kim ES, et al.
    HAWAIIAN SKIRT regulates the quiescent center-independent meristem activity in Arabidopsis roots.
    Physiol Plant, 2016. 157(2): p. 221-33
    [PMID:26968317]
  6. Husbands AY,Aggarwal V,Ha T,Timmermans MC
    In Planta Single-Molecule Pull-Down Reveals Tetrameric Stoichiometry of HD-ZIPIII:LITTLE ZIPPER Complexes.
    Plant Cell, 2016. 28(8): p. 1783-94
    [PMID:27385814]
  7. Di Ruocco G, et al.
    Differential spatial distribution of miR165/6 determines variability in plant root anatomy.
    Development, 2018.
    [PMID:29158439]
  8. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  9. Hashimoto K,Miyashima S,Sato-Nara K,Yamada T,Nakajima K
    Functionally Diversified Members of the MIR165/6 Gene Family Regulate Ovule Morphogenesis in Arabidopsis thaliana.
    Plant Cell Physiol., 2018. 59(5): p. 1017-1026
    [PMID:29462472]