PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010538242.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 224aa    MW: 25433.4 Da    PI: 5.0457
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010538242.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.90.00021722081354
                     HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     R ++++ +  Lr+++P       + ++ a iL +Av+Y+ksL
  XP_010538242.1 172 RMKMKKIMKVLRRIVPGG-----EQMNTACILDEAVQYLKSL 208
                     77899999999****985.....68***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF010562.5E-569212IPR012682Transcription regulator Myc, N-terminal
PROSITE profilePS5088810.563159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-8169215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-8169217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MQKDLRFRQK AIATHFSDEV GDSNMQVPYA SSSAFDYVLP PCAKLRPFHD VELQPSMACS  60
KNFIIFDQTC DRSQVMYHPE MTRKLNSPAL NAFASSFQNK HAGECFSNSD QEEASSSMKE  120
DSDEIDALLS FDEEEEDDNE EEAEEVSTAR NWNLSPETSS SSYRCNNGQK KRMKMKKIMK  180
VLRRIVPGGE QMNTACILDE AVQYLKSLKA EAHKLGVGNF MSRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168176QKKRMKMKK
2170176KRMKMKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010538242.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010538243.21e-169PREDICTED: transcription factor bHLH144-like
RefseqXP_010538244.21e-169PREDICTED: transcription factor bHLH144-like
RefseqXP_019058010.11e-169PREDICTED: transcription factor bHLH144-like
SwissprotQ9ASX98e-75BH144_ARATH; Transcription factor bHLH144
TrEMBLD7KEN43e-73D7KEN4_ARALL; Uncharacterized protein
STRINGXP_010538242.11e-168(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61951626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.21e-71bHLH family protein
Publications ? help Back to Top
  1. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]
  2. Cai Q, et al.
    The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis.
    Plant Cell Physiol., 2016. 57(8): p. 1583-92
    [PMID:27388339]
  3. Yamamoto M,Takahashi T
    Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis.
    Plant Signal Behav, 2017. 12(1): p. e1276685
    [PMID:28045577]