PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

ERF

Protein Properties

Length: 253aa MW: 28487 Da PI: 4.9345

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010538165.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.2	1e-18	31	80	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr+++ +gr++AeIr p++ + r++lg+f+taeeAa a+++a+++++g XP_010538165.1 31 KYLGVRRRP-WGRYAAEIRNPTT---KERYWLGTFDTAEEAAMAYDRAARSMRG 80 799****.******965...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	21.232	31	88	IPR001471	AP2/ERF domain
Pfam	PF00847	7.7E-13	31	80	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.9E-29	31	87	IPR001471	AP2/ERF domain
CDD	cd00018	1.18E-31	31	87	No hit	No description
SuperFamily	SSF54171	3.01E-21	31	88	IPR016177	DNA-binding domain
SMART	SM00380	4.6E-34	31	94	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.7E-9	32	43	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.7E-9	54	70	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MEFNGVSKSG SSSKSRRTRI QQQQQQNDEI KYLGVRRRPW GRYAAEIRNP TTKERYWLGT 60 FDTAEEAAMA YDRAARSMRG STARTNFIYP DMPHGSSVTA CVSPDESNRL ISEIFNPTGQ 120 VENFAYNNQY PSTNNQSSIE FSFNNNDNLQ ANGWFHGVEC GYQTGYSNVV QSHSHELPPL 180 PPSTCVGAEL TLPQTENSYW DTPAVSVEAL GHCQDVNKFN DAFNMQDYAF GHNSLADQDT 240 LTHLDASSVF FFE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	2e-19	32	87	3	59	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A	3e-19	31	87	14	71	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00163	DAP	Transfer from AT1G28160	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010538165.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010538165.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF087-like
Swissprot	Q9FZ90	1e-77	ERF87_ARATH; Ethylene-responsive transcription factor ERF087
TrEMBL	A0A0D3D6B6	4e-77	A0A0D3D6B6_BRAOL; Uncharacterized protein
STRING	XP_010538165.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12933	15	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28160.1	2e-56	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]