PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_010538109.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 298aa MW: 32424 Da PI: 6.0604

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010538109.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51	2.6e-16	163	209	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L++l+P++ K +Ka++L +A+eY+k+Lq XP_010538109.1 163 VHNLSEKRRRSRINERLKALQKLIPNS-----NKTDKASMLDEAIEYLKQLQ 209 6***********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.63E-18	155	213	No hit	No description
SuperFamily	SSF47459	1.44E-19	157	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.158	159	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.9E-19	160	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.2E-14	163	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.1E-17	165	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MADPDLYGGP DTESSSPSQP EEISAFFNHF LHGPSSASSS SRVRFRPLFD HSTASPPPPP 60 YDAVLDPVED IGRTSGSAVR TDLVSRNAVG KSGSGADLSS SSGFDVSDHA AYFGSGLKDM 120 TENATSSTGD ISWESEKRSG ASEMPSNIMR PSSSSKRCRA AEVHNLSEKR RRSRINERLK 180 ALQKLIPNSN KTDKASMLDE AIEYLKQLQL RVQMLVMSNG VSLYPGILNP MKLCRTGGMS 240 YLEGYGQQLP SLPRFDPLSD IAITSETRFG FEPSSSRTNY GLSREGDIGE ENKELLRS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010538109.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010538109.1	0.0	PREDICTED: transcription factor SPATULA-like
TrEMBL	A0A1R3I8F9	1e-55	A0A1R3I8F9_COCAP; Uncharacterized protein
STRING	XP_010538109.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4199	27	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	1e-35	bHLH family protein