PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

C2H2

Protein Properties

Length: 233aa MW: 25267.2 Da PI: 10.1976

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010537886.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00018	73	95	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H XP_010537886.1 73 FSCNYCQRKFYSSQALGGHQNAH 95 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.49E-6	70	100	No hit	No description
PROSITE profile	PS50157	11.427	73	100	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	75	95	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009640	Biological Process	photomorphogenesis
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
METIGKQDQD SGHRDLELGL TLLSKDPARG PGSLKLGPVG SSLGLIETSG LRQSKTEERG 60 GGNDPNESDP RVFSCNYCQR KFYSSQALGG HQNAHKRERT LAKRGHYKMG LSFSSSSSSP 120 SSSAFAFGHA ATRFASMASL PLHRSTNRST LGIQAHSTIH KPFFGQTANY TASFCHVFRQ 180 NIHQKPTVGM ISPEKIHAGG GTSSIATKIE NGGHFKSMHE DHQFNNIDLT LKL

Functional Description ? help Back to Top
Source	Description
UniProt	May play a role in the regulation of shoot development, downstream of photomorphogenic activation (Probable). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269\|PubMed:24808098, ECO:0000305\|PubMed:8980531}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010537886.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by white light in dark-grown seedlings. {ECO:0000269\|PubMed:10794528}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010537886.1	1e-172	PREDICTED: zinc finger protein 1
Swissprot	Q42485	1e-73	ZFP1_ARATH; Zinc finger protein 1
TrEMBL	A0A384KNY0	3e-71	A0A384KNY0_ARATH; ZFP1
TrEMBL	Q0V814	3e-71	Q0V814_ARATH; At1g80730
STRING	XP_010537886.1	1e-172	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11858	16	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	1e-69	zinc-finger protein 1

Publications ? help Back to Top
Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098]