PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010537616.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | AP2 | ||||||||
Protein Properties | Length: 501aa MW: 56088.2 Da PI: 6.6211 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.4 | 1.1e-15 | 269 | 328 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aaka++ a++k++g XP_010537616.1 269 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAAKAYDLAALKYWG 328 78*******************655454478446*************************98 PP | |||||||
2 | AP2 | 48.3 | 2.4e-15 | 371 | 422 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_010537616.1 371 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 422 78****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.5E-12 | 269 | 328 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.66E-17 | 269 | 338 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 9.78E-22 | 269 | 338 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.2E-16 | 270 | 337 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.9E-30 | 270 | 342 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.085 | 270 | 336 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-6 | 271 | 282 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.9E-10 | 371 | 422 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.34E-25 | 371 | 432 | No hit | No description |
SuperFamily | SSF54171 | 5.69E-18 | 371 | 432 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.3E-19 | 372 | 430 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.3E-34 | 372 | 436 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.098 | 372 | 430 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-6 | 412 | 432 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 501 aa Download sequence Send to blast |
MSKWLGFSLT PHLRLGEEEE EQEHQIDGGD EFSDQPLKTS LMPLRSDGSL FSSDPTSRPL 60 HAWRYDINVN LVGANDGGTN DHVSNVHHHH HEDLLGCCLS SSNPQSQQYH NQADANCTNM 120 FNTNPSDLIL HQQTLVTPHH YPSDPSPRLS YGPFETAGSI SGSKSWLSQG SSSLPLLDIA 180 AEERGNPSID DFTIEEANNN NANGSMLSLT MSRYGDSNEI NGTISDNIGD NVEPLVIKGD 240 DSRKRSIGKS PVKESIPRKS SDSFGQRTSQ YRGVTRHRWT GRYEAHLWDN SCRKEGQTRK 300 GRQVYLGGYD KEEKAAKAYD LAALKYWGPT THLNFPVSNY EKELEETKSM NRQEFVAMLR 360 RKSSGFSRGA SVYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF 420 RGTNAVTNFD ISRYDVKRIC SSSTLIAGDQ AKRSPTNSGG HDHREAAGDS HQHDHDHDHH 480 RQDQDHDHHG ETIPMFALWN A |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010537616.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010537616.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL1 isoform X1 | ||||
Swissprot | Q1PFE1 | 0.0 | AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | A0A178WFN2 | 1e-175 | A0A178WFN2_ARATH; Uncharacterized protein | ||||
STRING | XP_010537616.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11747 | 25 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-148 | AP2 family protein |
Publications ? help Back to Top | |||
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