PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010537446.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | C3H | ||||||||
Protein Properties | Length: 337aa MW: 38399.4 Da PI: 6.1535 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.1 | 2.5e-12 | 196 | 221 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ XP_010537446.1 196 YQPDICKDYKETGYCGYGDSCKFMHD 221 67789********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.57E-9 | 194 | 227 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.878 | 195 | 223 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-7 | 195 | 222 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-10 | 196 | 221 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.2E-13 | 196 | 226 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 1.2E-13 | 255 | 314 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Pfam | PF13920 | 7.8E-9 | 272 | 315 | No hit | No description |
SuperFamily | SSF57850 | 3.53E-13 | 272 | 316 | No hit | No description |
SMART | SM00184 | 1.8E-4 | 273 | 310 | IPR001841 | Zinc finger, RING-type |
CDD | cd00162 | 4.36E-8 | 273 | 314 | No hit | No description |
PROSITE profile | PS50089 | 10.409 | 273 | 311 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 288 | 297 | IPR017907 | Zinc finger, RING-type, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MAESSETQTS RQESQPAEQE SQPQQVCSFF RKPSKAKNIR KRTIDADEDE DSKSGSSLLN 60 NLKKAQKTDS KLYFSSGPSK STATTDEAPE RTVFHYESSK EIQVQNDSKA TATLETETEF 120 TRDARAIRER VLKRAEEALK GNKKNPDEKL YTGIHGYTDH KAGFRREQTI SSEKAGGSHG 180 PLRASAHIRV SARFDYQPDI CKDYKETGYC GYGDSCKFMH DRGDYKPGWQ IEKEYEEAEK 240 ARKRNLAMGI EDDDEEDEDD DDDEDDGELP FACFICRQPF VDPVVTKCKH YFCEHCALKH 300 HAKNKKCFVC NQPTQGIFNT AHEIKKKMAE DQRSKGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5z56_M | 6e-67 | 25 | 336 | 13 | 324 | RING finger protein 113A |
5z58_M | 6e-67 | 25 | 336 | 13 | 324 | RING finger protein 113A |
6ff4_t | 6e-67 | 25 | 336 | 13 | 324 | RING finger protein 113A |
6ff7_t | 6e-67 | 25 | 336 | 13 | 324 | RING finger protein 113A |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010537446.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010537443.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 1 | ||||
Refseq | XP_010537444.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 1 | ||||
Refseq | XP_010537445.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 1 | ||||
Refseq | XP_010537446.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 1 | ||||
Swissprot | Q8GX84 | 0.0 | C3H1_ARATH; Zinc finger CCCH domain-containing protein 1 | ||||
TrEMBL | R0GQF7 | 0.0 | R0GQF7_9BRAS; Uncharacterized protein | ||||
STRING | XP_010537443.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 1e-159 | C3H family protein |