PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010537444.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 337aa    MW: 38399.4 Da    PI: 6.1535
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010537444.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.5e-12196221126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     y   +C+++ +tG+C yGd+CkF+H+
  XP_010537444.1 196 YQPDICKDYKETGYCGYGDSCKFMHD 221
                     67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.57E-9194227IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878195223IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7195222IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-10196221IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-13196226IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.2E-13255314IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139207.8E-9272315No hitNo description
SuperFamilySSF578503.53E-13272316No hitNo description
SMARTSM001841.8E-4273310IPR001841Zinc finger, RING-type
CDDcd001624.36E-8273314No hitNo description
PROSITE profilePS5008910.409273311IPR001841Zinc finger, RING-type
PROSITE patternPS005180288297IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAESSETQTS RQESQPAEQE SQPQQVCSFF RKPSKAKNIR KRTIDADEDE DSKSGSSLLN  60
NLKKAQKTDS KLYFSSGPSK STATTDEAPE RTVFHYESSK EIQVQNDSKA TATLETETEF  120
TRDARAIRER VLKRAEEALK GNKKNPDEKL YTGIHGYTDH KAGFRREQTI SSEKAGGSHG  180
PLRASAHIRV SARFDYQPDI CKDYKETGYC GYGDSCKFMH DRGDYKPGWQ IEKEYEEAEK  240
ARKRNLAMGI EDDDEEDEDD DDDEDDGELP FACFICRQPF VDPVVTKCKH YFCEHCALKH  300
HAKNKKCFVC NQPTQGIFNT AHEIKKKMAE DQRSKGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M6e-672533613324RING finger protein 113A
5z58_M6e-672533613324RING finger protein 113A
6ff4_t6e-672533613324RING finger protein 113A
6ff7_t6e-672533613324RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010537444.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010537443.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
RefseqXP_010537444.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
RefseqXP_010537445.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
RefseqXP_010537446.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
SwissprotQ8GX840.0C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLR0GQF70.0R0GQF7_9BRAS; Uncharacterized protein
STRINGXP_010537443.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-159C3H family protein