PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010537275.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 158aa    MW: 17523.5 Da    PI: 4.3108
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010537275.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.30.00063444854
                    HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH  8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                    rE++R + + ++f+ Lr++  + a       ++ a+i   A +YI++L
  XP_010537275.1  4 REQKRDSSMHEKFQLLRSITNShA-------VNEASIMVDASKYIQEL 44
                    9******************99955.......999***********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.64E-7357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-6456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.81E-581148No hitNo description
PROSITE profilePS516718.94882156IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MASREQKRDS SMHEKFQLLR SITNSHAVNE ASIMVDASKY IQELKQKVET INEEIAAEQS  60
SRDRTDPFPM VTVETLEKGF LINVFTGKNQ QGLLVSVLEA FEDLGLNVLE ARVSCTDTFS  120
LQAVGEEQNE DGENMDAETV KHAITEAIRG YESAGPLG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010537275.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010537275.11e-114PREDICTED: uncharacterized protein LOC104812010 isoform X1
TrEMBLA0A1J3DZC51e-72A0A1J3DZC5_NOCCA; Transcription factor SCREAM2 (Fragment)
TrEMBLD7LF412e-73D7LF41_ARALL; Uncharacterized protein
STRINGXP_010537275.11e-113(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM159433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.11e-12bHLH family protein