PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010537201.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 740aa MW: 81181.6 Da PI: 6.2787 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64 | 2.1e-20 | 55 | 110 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k +++t++q++eLe++F+++++p++++r eL+++l L+++q+k+WFqNrR+++k XP_010537201.1 55 KKKYHRHTPHQIQELESFFKECPHPDEKQRLELSRRLALETKQIKFWFQNRRTQMK 110 79999************************************************999 PP | |||||||
2 | START | 187.5 | 7e-59 | 251 | 474 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 la++a++el+k+a+ ++p+W k es+n de+++ + + + + ea+r++gvv ++ lve+l+d + +W+e+++ +a+t+ XP_010537201.1 251 LALKAMDELIKLADPDCPLWIKNTnsekESLNHDEYRSVYAGA-TctrnpgFAAEASRETGVVLINSLALVETLMDAN-RWTEMFEsivaRASTI 343 6899******************999999999999999888544.25888999**************************.**************** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 +vissg g lqlm+ae+q++splvp R + f+Ry++q+ +g w++vdvS d +++ p+ +s+ +++lpSg++i++++ng+skvtwveh XP_010537201.1 344 DVISSGtggsmnGCLQLMQAEFQVISPLVPtRQVKFLRYCKQHADGLWAVVDVSSDINRDGPNLQSYGGCRRLPSGCIIQDMGNGYSKVTWVEHS 438 **************************************************************9******************************** PP E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +++++ +h l+r+l++sgl ga++ +atlqrqce+ XP_010537201.1 439 EYDESNVHHLYRQLLSSGLGLGAQRSLATLQRQCES 474 **********************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.97E-20 | 38 | 112 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.4E-21 | 41 | 106 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.734 | 52 | 112 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.5E-18 | 54 | 116 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.83E-19 | 55 | 112 | No hit | No description |
Pfam | PF00046 | 4.7E-18 | 55 | 110 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 87 | 110 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 41.609 | 241 | 477 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.65E-31 | 244 | 475 | No hit | No description |
CDD | cd08875 | 3.23E-116 | 245 | 473 | No hit | No description |
SMART | SM00234 | 7.3E-48 | 250 | 474 | IPR002913 | START domain |
Pfam | PF01852 | 1.4E-51 | 251 | 474 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.15E-18 | 520 | 735 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 740 aa Download sequence Send to blast |
MNGHGDIGLG GESFDPGFLG RLRDDEYESR SGSDNFDAVS GDDQEARGQD KGRKKKKYHR 60 HTPHQIQELE SFFKECPHPD EKQRLELSRR LALETKQIKF WFQNRRTQMK TQLERHENVI 120 LRQENEKLLA ENDLLKEAMR SPVCNACGGP AVPGDVTYEQ QHLRFENARL KDELARISSL 180 ANKFLGRPVS SLVGPPPQPS GLDVSILGLA TGINGGISSD IPLGIDFGDG HLMKPPGGND 240 IVYERSMFVD LALKAMDELI KLADPDCPLW IKNTNSEKES LNHDEYRSVY AGATCTRNPG 300 FAAEASRETG VVLINSLALV ETLMDANRWT EMFESIVARA STIDVISSGT GGSMNGCLQL 360 MQAEFQVISP LVPTRQVKFL RYCKQHADGL WAVVDVSSDI NRDGPNLQSY GGCRRLPSGC 420 IIQDMGNGYS KVTWVEHSEY DESNVHHLYR QLLSSGLGLG AQRSLATLQR QCESFSALLS 480 SLNPTDNHSG LTPAGAKSVL KLAQRMGFNF FAGVSGSSVR KWEKLPVANV GEDMRILTRK 540 NVSDPGEPSG VILSAATSVW IPVAQHRLFD FLRDQNCRNQ WDILSNGGTM NEMVRIPKGR 600 QHDGNSVSLL RASQGIDQTE SSMLILQETW TDPSGAMVVY APVDVSSMNV VMNGGDSAYV 660 ALLPSGFWIS PDGSKGKVKN EVDGNTTTST SNNNGGCILT VGFQILVNSL PNARLNMESV 720 DTVNNLISCT IHKIKGALLQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-GCATTAAATGC-3'. {ECO:0000269|PubMed:16778018}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00559 | DAP | Transfer from AT5G52170 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010537201.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010537197.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG7-like isoform X1 | ||||
Swissprot | Q9LTK3 | 0.0 | HDG7_ARATH; Homeobox-leucine zipper protein HDG7 | ||||
TrEMBL | A0A1Q3CYE9 | 0.0 | A0A1Q3CYE9_CEPFO; Homeobox domain-containing protein/START domain-containing protein | ||||
STRING | XP_010537197.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52170.1 | 0.0 | homeodomain GLABROUS 7 |
Publications ? help Back to Top | |||
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