PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010537198.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 777aa    MW: 84953.9 Da    PI: 6.3731
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010537198.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.92.3e-2093148156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++k +++t++q++eLe++F+++++p++++r eL+++l L+++q+k+WFqNrR+++k
  XP_010537198.1  93 KKKYHRHTPHQIQELESFFKECPHPDEKQRLELSRRLALETKQIKFWFQNRRTQMK 148
                     79999************************************************999 PP
2START187.37.7e-592895122206
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     la++a++el+k+a+ ++p+W k      es+n de+++  + + +      +  ea+r++gvv  ++  lve+l+d + +W+e+++    +a+t+
  XP_010537198.1 289 LALKAMDELIKLADPDCPLWIKNTnsekESLNHDEYRSVYAGA-TctrnpgFAAEASRETGVVLINSLALVETLMDAN-RWTEMFEsivaRASTI 381
                     6899******************999999999999999888544.25888999**************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     +vissg      g lqlm+ae+q++splvp R + f+Ry++q+ +g w++vdvS d +++ p+ +s+  +++lpSg++i++++ng+skvtwveh 
  XP_010537198.1 382 DVISSGtggsmnGCLQLMQAEFQVISPLVPtRQVKFLRYCKQHADGLWAVVDVSSDINRDGPNLQSYGGCRRLPSGCIIQDMGNGYSKVTWVEHS 476
                     **************************************************************9******************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++++ +h l+r+l++sgl  ga++ +atlqrqce+
  XP_010537198.1 477 EYDESNVHHLYRQLLSSGLGLGAQRSLATLQRQCES 512
                     **********************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.18E-2076150IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.0E-2179144IPR009057Homeodomain-like
PROSITE profilePS5007117.73490150IPR001356Homeobox domain
SMARTSM003899.5E-1892154IPR001356Homeobox domain
PfamPF000465.0E-1893148IPR001356Homeobox domain
CDDcd000867.49E-1993150No hitNo description
PROSITE patternPS000270125148IPR017970Homeobox, conserved site
PROSITE profilePS5084841.609279515IPR002913START domain
SuperFamilySSF559611.92E-31282513No hitNo description
CDDcd088751.85E-115283511No hitNo description
SMARTSM002347.3E-48288512IPR002913START domain
PfamPF018521.5E-51289512IPR002913START domain
SuperFamilySSF559613.16E-18558772No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 777 aa     Download sequence    Send to blast
MMSFEGFNSI SCNNTNSSAV VSATVPSSVV SLLPVRGKMN GHGDIGLGGE SFDPGFLGRL  60
RDDEYESRSG SDNFDAVSGD DQEARGQDKG RKKKKYHRHT PHQIQELESF FKECPHPDEK  120
QRLELSRRLA LETKQIKFWF QNRRTQMKTQ LERHENVILR QENEKLLAEN DLLKEAMRSP  180
VCNACGGPAV PGDVTYEQQH LRFENARLKD ELARISSLAN KFLGRPVSSL VGPPPQPSGL  240
DVSILGLATG INGGISSDIP LGIDFGDGHL MKPPGGNDIV YERSMFVDLA LKAMDELIKL  300
ADPDCPLWIK NTNSEKESLN HDEYRSVYAG ATCTRNPGFA AEASRETGVV LINSLALVET  360
LMDANRWTEM FESIVARAST IDVISSGTGG SMNGCLQLMQ AEFQVISPLV PTRQVKFLRY  420
CKQHADGLWA VVDVSSDINR DGPNLQSYGG CRRLPSGCII QDMGNGYSKV TWVEHSEYDE  480
SNVHHLYRQL LSSGLGLGAQ RSLATLQRQC ESFSALLSSL NPTDNHSGLT PAGAKSVLKL  540
AQRMGFNFFA GVSGSSVRKW EKLPVANVGE DMRILTRKNV SDPGEPSGVI LSAATSVWIP  600
VAQHRLFDFL RDQNCRNQWD ILSNGGTMNE MVRIPKGRQH DGNSVSLLRA SGIDQTESSM  660
LILQETWTDP SGAMVVYAPV DVSSMNVVMN GGDSAYVALL PSGFWISPDG SKGKVKNEVD  720
GNTTTSTSNN NGGCILTVGF QILVNSLPNA RLNMESVDTV NNLISCTIHK IKGALLQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-GCATTAAATGC-3'. {ECO:0000269|PubMed:16778018}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00559DAPTransfer from AT5G52170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010537198.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010537198.10.0PREDICTED: homeobox-leucine zipper protein HDG7-like isoform X2
SwissprotQ9LTK30.0HDG7_ARATH; Homeobox-leucine zipper protein HDG7
TrEMBLA0A1Q3BWX70.0A0A1Q3BWX7_CEPFO; Homeobox domain-containing protein/START domain-containing protein
STRINGXP_010537197.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52170.10.0homeodomain GLABROUS 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]