PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010537174.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

C2H2

Protein Properties

Length: 616aa MW: 68272.1 Da PI: 9.289

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010537174.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	76	97	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C+k F ++ n++rH r+H XP_010537174.1 76 KCEKCSKEFCSPVNYRRHSRLH 97 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.263	75	102	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	77	97	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 616 aa Download sequence Send to blast
MAIAKSNPYN SMDLVKQDGN DSLDMLIRRA VGKEPFLSFP RPENNPVQLF QLLHAFDQPE 60 VSGWPLLTPL KVQMQKCEKC SKEFCSPVNY RRHSRLHRRL RKPDKDSGKD RNILGAFWDK 120 LSVDEAKGIL SLKGMALEEV SGSSVESALM TLIQKPGFIA LPQYYLRAGS DVLDIIQARP 180 SRFPVSSQEL FNILDEASEK TFLCGAAASM QKYIFDGETG KSALEAKNVV ACASFLLEQK 240 LIKAWLADKD AEALWCQKLL VEEEEAAQRR RAELLERKRR KKLRQREQRV KEQRSEQKED 300 SKDSGSTTSE EQQDPAESSS PLSVASNSEA QRPDGIPMED SSETNGSGNC ETRALVSHSA 360 HDDGLGNNGC IMERKGGRRR MGGFVPSKSR REMPNGFHSN LGSHVPKLGG MSKNGTNRET 420 RASAIVNTAK VWSRKTDNPR SISLDESVTK PDQTKKSEVM IGSISVTIGS GGGNNQTGSS 480 EDDGRTKNDQ VKPLPEQPAV KIWRPVSRHG TKPSKQIENA DKDSILGSNG NKNISHVEEK 540 ITNNGSLQFN ICEAKAFLAE RWKEATSVEH VTLALSEEDD AIDPTKEVVV IARSKSRVKP 600 DKAANKMKYV PKLRSV

Sequence ? help Back to Top

Protein Sequence Length: 616 aa Download sequence Send to blast

MAIAKSNPYN SMDLVKQDGN DSLDMLIRRA VGKEPFLSFP RPENNPVQLF QLLHAFDQPE  60
VSGWPLLTPL KVQMQKCEKC SKEFCSPVNY RRHSRLHRRL RKPDKDSGKD RNILGAFWDK  120
LSVDEAKGIL SLKGMALEEV SGSSVESALM TLIQKPGFIA LPQYYLRAGS DVLDIIQARP  180
SRFPVSSQEL FNILDEASEK TFLCGAAASM QKYIFDGETG KSALEAKNVV ACASFLLEQK  240
LIKAWLADKD AEALWCQKLL VEEEEAAQRR RAELLERKRR KKLRQREQRV KEQRSEQKED  300
SKDSGSTTSE EQQDPAESSS PLSVASNSEA QRPDGIPMED SSETNGSGNC ETRALVSHSA  360
HDDGLGNNGC IMERKGGRRR MGGFVPSKSR REMPNGFHSN LGSHVPKLGG MSKNGTNRET  420
RASAIVNTAK VWSRKTDNPR SISLDESVTK PDQTKKSEVM IGSISVTIGS GGGNNQTGSS  480
EDDGRTKNDQ VKPLPEQPAV KIWRPVSRHG TKPSKQIENA DKDSILGSNG NKNISHVEEK  540
ITNNGSLQFN ICEAKAFLAE RWKEATSVEH VTLALSEEDD AIDPTKEVVV IARSKSRVKP  600
DKAANKMKYV PKLRSV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	275	282	ERKRRKKL
2	279	285	RKKLRQR
3	280	290	KKLRQREQRVK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010537174.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010537173.1	0.0	PREDICTED: uncharacterized protein LOC104811971 isoform X2
TrEMBL	V4MP25	0.0	V4MP25_EUTSA; Uncharacterized protein
STRING	XP_010537170.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	0.0	C2H2-like zinc finger protein