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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010537173.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | C2H2 | ||||||||
Protein Properties | Length: 616aa MW: 68272.1 Da PI: 9.289 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00016 | 76 | 97 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C+k F ++ n++rH r+H XP_010537173.1 76 KCEKCSKEFCSPVNYRRHSRLH 97 7*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.263 | 75 | 102 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 77 | 97 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 616 aa Download sequence Send to blast |
MAIAKSNPYN SMDLVKQDGN DSLDMLIRRA VGKEPFLSFP RPENNPVQLF QLLHAFDQPE 60 VSGWPLLTPL KVQMQKCEKC SKEFCSPVNY RRHSRLHRRL RKPDKDSGKD RNILGAFWDK 120 LSVDEAKGIL SLKGMALEEV SGSSVESALM TLIQKPGFIA LPQYYLRAGS DVLDIIQARP 180 SRFPVSSQEL FNILDEASEK TFLCGAAASM QKYIFDGETG KSALEAKNVV ACASFLLEQK 240 LIKAWLADKD AEALWCQKLL VEEEEAAQRR RAELLERKRR KKLRQREQRV KEQRSEQKED 300 SKDSGSTTSE EQQDPAESSS PLSVASNSEA QRPDGIPMED SSETNGSGNC ETRALVSHSA 360 HDDGLGNNGC IMERKGGRRR MGGFVPSKSR REMPNGFHSN LGSHVPKLGG MSKNGTNRET 420 RASAIVNTAK VWSRKTDNPR SISLDESVTK PDQTKKSEVM IGSISVTIGS GGGNNQTGSS 480 EDDGRTKNDQ VKPLPEQPAV KIWRPVSRHG TKPSKQIENA DKDSILGSNG NKNISHVEEK 540 ITNNGSLQFN ICEAKAFLAE RWKEATSVEH VTLALSEEDD AIDPTKEVVV IARSKSRVKP 600 DKAANKMKYV PKLRSV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 275 | 282 | ERKRRKKL |
2 | 279 | 285 | RKKLRQR |
3 | 280 | 290 | KKLRQREQRVK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010537173.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010537173.1 | 0.0 | PREDICTED: uncharacterized protein LOC104811971 isoform X2 | ||||
TrEMBL | V4MP25 | 0.0 | V4MP25_EUTSA; Uncharacterized protein | ||||
STRING | XP_010537170.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25610.1 | 0.0 | C2H2-like zinc finger protein |