PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010537037.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 165aa MW: 18808.5 Da PI: 9.9495 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.9 | 1.9e-19 | 10 | 64 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ ++t+ q+ +Le+ F +n+++ e + +LA++lgL+ rqV vWFqN+Ra+ k XP_010537037.1 10 NRKKRLTQGQISVLEKSFVMNKKLEPELKHQLASQLGLPPRQVAVWFQNKRARCK 64 566789***********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 102.3 | 4.1e-33 | 10 | 102 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ++k+rl++ q+++LE+sF +++kLepe K++la++Lgl prqvavWFqn+RAR kt+ lE ++ a+ ++++a ++++rLe+ev+ L+eel++ XP_010537037.1 10 NRKKRLTQGQISVLEKSFVMNKKLEPELKHQLASQLGLPPRQVAVWFQNKRARCKTQTLELQHGAIMEKLEAALADKRRLEREVKFLQEELRK 102 58***************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.48E-18 | 5 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.184 | 6 | 66 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.9E-18 | 8 | 70 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.38E-15 | 9 | 66 | No hit | No description |
Pfam | PF00046 | 8.0E-17 | 10 | 64 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-19 | 13 | 69 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.4E-5 | 37 | 46 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 41 | 64 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.4E-5 | 46 | 62 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009646 | Biological Process | response to absence of light | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MEKPQTQTRN RKKRLTQGQI SVLEKSFVMN KKLEPELKHQ LASQLGLPPR QVAVWFQNKR 60 ARCKTQTLEL QHGAIMEKLE AALADKRRLE REVKFLQEEL RKSRDQLSRP MTKNGHLDHR 120 TASPVDDSNC SGDCFAGNDH QVMGLDELYA CLITSGHGST SASWI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010537037.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010537037.1 | 1e-121 | PREDICTED: homeobox-leucine zipper protein ATHB-52 | ||||
Swissprot | Q9FN29 | 4e-61 | ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52 | ||||
TrEMBL | A0A078JVD7 | 4e-60 | A0A078JVD7_BRANA; BnaCnng64030D protein | ||||
STRING | XP_010537037.1 | 1e-121 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12107 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 2e-63 | homeobox protein 52 |