PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010536801.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 668aa    MW: 71713.1 Da    PI: 5.9281
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010536801.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.62.2e-32275332260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDg+nWrKYGqK vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g+Hnh+k
  XP_010536801.1 275 DDGFNWRKYGQKLVKGSEYPRSYYKCTHPNCQVKKKVERSR-EGHITEIIYKGSHNHPK 332
                     8****************************************.***************85 PP
2WRKY104.36.6e-33468526159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d k v++tYeg+Hnhe
  XP_010536801.1 468 LDDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHNHE 526
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-28273333IPR003657WRKY domain
SuperFamilySSF1182909.81E-26273333IPR003657WRKY domain
SMARTSM007741.2E-35274332IPR003657WRKY domain
PfamPF031067.5E-25275331IPR003657WRKY domain
PROSITE profilePS5081123.365275333IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-36453528IPR003657WRKY domain
SuperFamilySSF1182901.96E-28460528IPR003657WRKY domain
PROSITE profilePS5081137.838463528IPR003657WRKY domain
SMARTSM007741.9E-37468527IPR003657WRKY domain
PfamPF031068.4E-25469526IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MSGFDDHVAV MGEWIPRSPS PRTLFTAMLE EGKSSISKPV LERELSLNHG QITFEEEDAA  60
AEKKDSLQTG CFQLSEEAAN SRGCLSERLA ARAGFNAPKL NTENIPSPCL TISSPGLSPA  120
TLLESPVFLS NPLAQPSPTT GKRSFFPGGN SKDEFFDDIG ASSFTFQPVS RSSSSSFVPG  180
TVNKVSPISD HSFPDISTDY CNRPQTMEGV KPGSRTIETV DFRGNFPGTS AERHDTDPRE  240
TTREATDAGD DSEDKEPRGN GGGGDMVAGG GAPADDGFNW RKYGQKLVKG SEYPRSYYKC  300
THPNCQVKKK VERSREGHIT EIIYKGSHNH PKPPPSRRSA FGSSCPVLDI QTDGTGQDSV  360
WTGAQPHAVG TDEIAEEGSP EGNQSGSGDA ATATATMVDA SSTFSNDEDE DDCGTHGSVS  420
LGYEVGEGDE TESKRRKLDV YAAEMSGATR AIREPRVVVQ TTSDVDILDD GYRWRKYGQK  480
VVKGNPNPRS YYKCTAPGCT VRKHVERASH DLKSVITTYE GKHNHEVPAA RNSSHGGSGT  540
GPPGSTAAAQ THMRQPESRN RFESPVTVTS NGPFGRPFSF QPPPGFSFGL GQTGLHNLGM  600
PGLAFGQGKL PGFPVHPYLT PQPQVVGDPG MMLPRGTEPK VEPLSEPGVA LSEGSSIYRQ  660
IMSRLPHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-36275529878Probable WRKY transcription factor 4
2lex_A5e-36275529878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010536801.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010536801.10.0PREDICTED: probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLV4LSF00.0V4LSF0_EUTSA; Uncharacterized protein
STRINGXP_010536801.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79542740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]