PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010536613.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

SBP

Protein Properties

Length: 321aa MW: 35624.2 Da PI: 8.9199

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010536613.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.6	9.8e-40	110	186	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+++ls+++eyhrrhkvCevhsk+p+v+++g++ rfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ XP_010536613.1 110 CVVDGCDSNLSNCREYHRRHKVCEVHSKTPAVTINGRKLRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKHQP 186 9*************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	7.4E-33	104	171	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.317	107	184	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	8.34E-38	108	187	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.9E-30	110	183	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MDWSFNKQSS GYVSELYQEP VPDIPHIGES IPFGSPSSNK KGEFSFDLQL GNVGNSYVSA 60 SGNNNDTEPL TASGGKWKEA KPESSSSWSR SGPLSKRSRE IGDGTRTPFC VVDGCDSNLS 120 NCREYHRRHK VCEVHSKTPA VTINGRKLRF CQQCSRFHSL EEFDEGKRSC RKRLDGHNRR 180 RRKHQPDPDP VGTRPSSFSS SFRDTKLTQL SGLQVLTTMA EAASPGWRSS HNNRKSDSTR 240 WTSWVSDSDC ALSLLSSSSS SHHENVLQNQ QQPRTRASIP LAVQSLPYLA HEPFVSYGSD 300 GSVVSGNGSV SVPRAFPFHW E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-27	109	183	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010536613.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305\|PubMed:12202040}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010536613.1	0.0	PREDICTED: squamosa promoter-binding-like protein 13A
Refseq	XP_010536615.1	0.0	PREDICTED: squamosa promoter-binding-like protein 13A
Refseq	XP_010536616.1	0.0	PREDICTED: squamosa promoter-binding-like protein 13A
Swissprot	B9DI20	4e-72	SP13A_ARATH; Squamosa promoter-binding-like protein 13A
Swissprot	P0DI11	4e-72	SP13B_ARATH; Squamosa promoter-binding-like protein 13B
TrEMBL	S4WVY8	2e-80	S4WVY8_ARAAL; SQUAMOSA promoter binding protein-like protein 13
STRING	XP_010536613.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4111	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	2e-63	SBP family protein

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Xu M, et al. Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana. PLoS Genet., 2016. 12(8): p. e1006263 [PMID:27541584]