PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010536508.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | bHLH | ||||||||
Protein Properties | Length: 222aa MW: 24245.3 Da PI: 8.5007 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.4 | 5.9e-09 | 49 | 100 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ f+ Lr +lP ++K ++ + Av++I++ q XP_010536508.1 49 KILHRDIERQRRQEMAALFASLRNHLPLeY---IKGKRAVSDHVNGAVNFIRDAQ 100 6679************************77...9999999***********9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.78E-12 | 44 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.287 | 47 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.9E-8 | 49 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-6 | 49 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.72E-7 | 52 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MDPCNNPNAA RYQRQRSFSA AVDGDGDGGG GSSSRDVTGD GGDTKKKKKI LHRDIERQRR 60 QEMAALFASL RNHLPLEYIK GKRAVSDHVN GAVNFIRDAQ KRVKELSARR DELRRVMGSS 120 HHESDPDQAG SSGSGPASVM VQPCVSGIEV AVSSAVTGPE ALPLSRVLQV LYAHGLDVIS 180 SLTTRVNERL MHTIQVEVNS FGCLDLDWLQ QKLMEELILS RG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010536508.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010536508.1 | 1e-163 | PREDICTED: transcription factor bHLH126 | ||||
Swissprot | Q9STJ6 | 6e-88 | BH126_ARATH; Transcription factor bHLH126 | ||||
TrEMBL | A0A3P6EWZ8 | 1e-91 | A0A3P6EWZ8_BRAOL; Uncharacterized protein | ||||
STRING | XP_010536508.1 | 1e-163 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2968 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25410.1 | 7e-89 | bHLH family protein |