PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010536495.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 424aa    MW: 46318.2 Da    PI: 7.5949
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010536495.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.3e-0899120426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + Crf+ + G C+yGd+C++ H+
  XP_010536495.1  99 KVCRFWVQ-GNCQYGDKCRYLHC 120
                     68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.0522046IPR000571Zinc finger, CCCH-type
SMARTSM003560.432145IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-795119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.64795122IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-697121IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-698120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-699117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.108.4E-50118415IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003204.3E-5126165IPR001680WD40 repeat
SuperFamilySSF509783.3E-49126417IPR017986WD40-repeat-containing domain
CDDcd002006.20E-39129413No hitNo description
PfamPF004000.0037129165IPR001680WD40 repeat
PROSITE profilePS5029421.911133382IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.249133174IPR001680WD40 repeat
PROSITE patternPS006780152166IPR019775WD40 repeat, conserved site
PRINTSPR003203.1E-6152166IPR020472G-protein beta WD-40 repeat
SMARTSM003200.46205242IPR001680WD40 repeat
SMARTSM003203.2E-5249286IPR001680WD40 repeat
PfamPF004000.0032254286IPR001680WD40 repeat
PROSITE profilePS5008212.313256295IPR001680WD40 repeat
PRINTSPR003203.1E-6273287IPR020472G-protein beta WD-40 repeat
SMARTSM003202.1E-4289326IPR001680WD40 repeat
PfamPF004005.0E-4291325IPR001680WD40 repeat
PRINTSPR003203.1E-6313327IPR020472G-protein beta WD-40 repeat
SMARTSM0032029330373IPR001680WD40 repeat
SMARTSM003204.7376413IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MYGRSTLVYH RLRGHTAPSD STQKVCFHWR AGRCNRFPCP FLHRELPGPG QATASSSNNR  60
VADESGFAGP SYRRGPGFNG NGNSWRRFGG SRTVTKTEKV CRFWVQGNCQ YGDKCRYLHC  120
WSMGDSFSLL TQLGGHQKLV SSIALPSGSD KLYTASQDET LRIWDCASGQ CTSVFNLGGE  180
VGCMISEGPW LLVGMPNLVK AWNVQNNAEH TLTGPVGQVY SLIAANDLLF AGTEDGSILV  240
WRFNGATGSF DPAASLKGHT RAVVSLCVGK NRIYSGSMDN SIKVWSLDNL QCIQTLTEHE  300
SVVTSLICWD QFLLSCSLDN TVKIWVATEG GNLEVTYTHK EEHGVVALSG MHDAEAKPVL  360
MCSCNDNSLR LYDLPSFAER GKIFAKEEIR SIEIGPGGLF FTGDGSGQVK VWKWNTEPAA  420
ASSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A3e-211124164320Tako8
6g6n_A3e-211124164320Tako8
6g6n_B3e-211124164320Tako8
6g6n_C3e-211124164320Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010536495.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010536494.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X1
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLR0GZR90.0R0GZR9_9BRAS; Uncharacterized protein
STRINGXP_010536494.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1