PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010536494.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 428aa    MW: 46734.7 Da    PI: 7.4172
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010536494.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.4e-08103124426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + Crf+ + G C+yGd+C++ H+
  XP_010536494.1 103 KVCRFWVQ-GNCQYGDKCRYLHC 124
                     68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.0522450IPR000571Zinc finger, CCCH-type
SMARTSM003560.432549IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-799123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.64799126IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-6101125IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-6102124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-6103121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.108.7E-50122419IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003204.3E-5130169IPR001680WD40 repeat
SuperFamilySSF509783.39E-49130421IPR017986WD40-repeat-containing domain
CDDcd002005.81E-39133417No hitNo description
PfamPF004000.0037133169IPR001680WD40 repeat
PROSITE profilePS5029421.911137386IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.249137178IPR001680WD40 repeat
PRINTSPR003203.2E-6156170IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780156170IPR019775WD40 repeat, conserved site
SMARTSM003200.46209246IPR001680WD40 repeat
SMARTSM003203.2E-5253290IPR001680WD40 repeat
PfamPF004000.0032258290IPR001680WD40 repeat
PROSITE profilePS5008212.313260299IPR001680WD40 repeat
PRINTSPR003203.2E-6277291IPR020472G-protein beta WD-40 repeat
SMARTSM003202.1E-4293330IPR001680WD40 repeat
PfamPF004005.1E-4295329IPR001680WD40 repeat
PRINTSPR003203.2E-6317331IPR020472G-protein beta WD-40 repeat
SMARTSM0032029334377IPR001680WD40 repeat
SMARTSM003204.7380417IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MGLDMYGRST LVYHRLRGHT APSDSTQKVC FHWRAGRCNR FPCPFLHREL PGPGQATASS  60
SNNRVADESG FAGPSYRRGP GFNGNGNSWR RFGGSRTVTK TEKVCRFWVQ GNCQYGDKCR  120
YLHCWSMGDS FSLLTQLGGH QKLVSSIALP SGSDKLYTAS QDETLRIWDC ASGQCTSVFN  180
LGGEVGCMIS EGPWLLVGMP NLVKAWNVQN NAEHTLTGPV GQVYSLIAAN DLLFAGTEDG  240
SILVWRFNGA TGSFDPAASL KGHTRAVVSL CVGKNRIYSG SMDNSIKVWS LDNLQCIQTL  300
TEHESVVTSL ICWDQFLLSC SLDNTVKIWV ATEGGNLEVT YTHKEEHGVV ALSGMHDAEA  360
KPVLMCSCND NSLRLYDLPS FAERGKIFAK EEIRSIEIGP GGLFFTGDGS GQVKVWKWNT  420
EPAAASSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-211164204320Tako8
6g6n_A2e-211164204320Tako8
6g6n_B2e-211164204320Tako8
6g6n_C2e-211164204320Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010536494.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010536494.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X1
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLR0GZR90.0R0GZR9_9BRAS; Uncharacterized protein
STRINGXP_010536494.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1