PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010536492.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 424aa    MW: 46277.2 Da    PI: 7.8738
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010536492.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.7e-0899120426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + Crf+++ G C+yGd+C++ H+
  XP_010536492.1  99 KVCRFWFQ-GKCQYGDKCRYLHC 120
                     68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.0092046IPR000571Zinc finger, CCCH-type
SMARTSM003560.132145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15995122IPR000571Zinc finger, CCCH-type
SMARTSM003560.002897121IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-698120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-599117IPR000571Zinc finger, CCCH-type
SuperFamilySSF509781.3E-48106414IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.7E-49118415IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003205.5E-5126165IPR001680WD40 repeat
PfamPF004000.0028129165IPR001680WD40 repeat
CDDcd002001.27E-39129413No hitNo description
PROSITE profilePS5008213.616133174IPR001680WD40 repeat
PROSITE profilePS5029422.201133382IPR017986WD40-repeat-containing domain
PROSITE patternPS006780152166IPR019775WD40 repeat, conserved site
PRINTSPR003203.1E-6152166IPR020472G-protein beta WD-40 repeat
SMARTSM003200.46205242IPR001680WD40 repeat
SMARTSM003203.2E-5249286IPR001680WD40 repeat
PfamPF004000.0032254286IPR001680WD40 repeat
PROSITE profilePS5008212.313256295IPR001680WD40 repeat
PRINTSPR003203.1E-6273287IPR020472G-protein beta WD-40 repeat
SMARTSM003202.1E-4289326IPR001680WD40 repeat
PfamPF004005.0E-4291325IPR001680WD40 repeat
PRINTSPR003203.1E-6313327IPR020472G-protein beta WD-40 repeat
SMARTSM0032029330373IPR001680WD40 repeat
SMARTSM003204.7376413IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MYGRSTLVYH RLRGHTAPSD STKKVCFHWR AGRCNRFQCP FLHRELPGPG QATASSSNNR  60
VAGESGFAGP SYRRGPGSNG NGNSWRRFGG SRTVTKTEKV CRFWFQGKCQ YGDKCRYLHC  120
WSMGDGFSLL TQLDGHQKLV SSIALPSGSD KLYTASQDET LRIWDCASGQ CTSVCNLGGE  180
VGCMISEGPW LLVGMPNLVK AWNVQNNAEH TLTGPVGQVY SLIAANDLLF AGTEDGSILV  240
WRFNGATGSF DPAASLKGHT RAVVSLCVGK NRIYSGSMDN SIKVWSLDNL QCIQTLTEHE  300
SVVTSLICWD QFLLSCSLDN TVKIWVATEG GNLEVTYTHK EEHGVVALSG MHDAEAKPVL  360
MCSCNDNSLR LYDLPSFAER GKIFAKEEIR SIEIGPGGLF FTGDGSGQVK VWKWNTEPAA  420
ASSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-221124165322Tako8
6g6n_A2e-221124165322Tako8
6g6n_B2e-221124165322Tako8
6g6n_C2e-221124165322Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010536492.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010536491.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X1
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A1J3GHE30.0A0A1J3GHE3_NOCCA; Zinc finger CCCH domain-containing protein 48
STRINGXP_010536491.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1