PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010536491.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | C3H | ||||||||
Protein Properties | Length: 428aa MW: 46693.7 Da PI: 7.7343 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.8 | 3.8e-08 | 103 | 124 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + Crf+++ G C+yGd+C++ H+ XP_010536491.1 103 KVCRFWFQ-GKCQYGDKCRYLHC 124 68******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.009 | 24 | 50 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.13 | 25 | 49 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.159 | 99 | 126 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0028 | 101 | 125 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.9E-6 | 102 | 124 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-5 | 103 | 121 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF50978 | 2.28E-48 | 110 | 418 | IPR017986 | WD40-repeat-containing domain |
Gene3D | G3DSA:2.130.10.10 | 1.7E-49 | 122 | 419 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 5.5E-5 | 130 | 169 | IPR001680 | WD40 repeat |
CDD | cd00200 | 1.12E-39 | 133 | 417 | No hit | No description |
Pfam | PF00400 | 0.0028 | 133 | 169 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 13.616 | 137 | 178 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 22.201 | 137 | 386 | IPR017986 | WD40-repeat-containing domain |
PRINTS | PR00320 | 3.2E-6 | 156 | 170 | IPR020472 | G-protein beta WD-40 repeat |
PROSITE pattern | PS00678 | 0 | 156 | 170 | IPR019775 | WD40 repeat, conserved site |
SMART | SM00320 | 0.46 | 209 | 246 | IPR001680 | WD40 repeat |
SMART | SM00320 | 3.2E-5 | 253 | 290 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.0032 | 258 | 290 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 12.313 | 260 | 299 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 3.2E-6 | 277 | 291 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 2.1E-4 | 293 | 330 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 5.1E-4 | 295 | 329 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 3.2E-6 | 317 | 331 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 29 | 334 | 377 | IPR001680 | WD40 repeat |
SMART | SM00320 | 4.7 | 380 | 417 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MGLDMYGRST LVYHRLRGHT APSDSTKKVC FHWRAGRCNR FQCPFLHREL PGPGQATASS 60 SNNRVAGESG FAGPSYRRGP GSNGNGNSWR RFGGSRTVTK TEKVCRFWFQ GKCQYGDKCR 120 YLHCWSMGDG FSLLTQLDGH QKLVSSIALP SGSDKLYTAS QDETLRIWDC ASGQCTSVCN 180 LGGEVGCMIS EGPWLLVGMP NLVKAWNVQN NAEHTLTGPV GQVYSLIAAN DLLFAGTEDG 240 SILVWRFNGA TGSFDPAASL KGHTRAVVSL CVGKNRIYSG SMDNSIKVWS LDNLQCIQTL 300 TEHESVVTSL ICWDQFLLSC SLDNTVKIWV ATEGGNLEVT YTHKEEHGVV ALSGMHDAEA 360 KPVLMCSCND NSLRLYDLPS FAERGKIFAK EEIRSIEIGP GGLFFTGDGS GQVKVWKWNT 420 EPAAASSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6g6m_A | 2e-22 | 116 | 420 | 5 | 322 | Tako8 |
6g6n_A | 2e-22 | 116 | 420 | 5 | 322 | Tako8 |
6g6n_B | 2e-22 | 116 | 420 | 5 | 322 | Tako8 |
6g6n_C | 2e-22 | 116 | 420 | 5 | 322 | Tako8 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010536491.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010536491.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X1 | ||||
Swissprot | Q9FNZ2 | 0.0 | C3H48_ARATH; Zinc finger CCCH domain-containing protein 48 | ||||
TrEMBL | A0A1J3GHE3 | 0.0 | A0A1J3GHE3_NOCCA; Zinc finger CCCH domain-containing protein 48 | ||||
TrEMBL | R0GZR9 | 0.0 | R0GZR9_9BRAS; Uncharacterized protein | ||||
STRING | XP_010536491.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1839 | 28 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25440.1 | 0.0 | zinc finger WD40 repeat protein 1 |