PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010536182.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

WRKY

Protein Properties

Length: 183aa MW: 20960.1 Da PI: 6.0375

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010536182.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.1	2.7e-31	122	180	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YY+C+ gCpvkk+ver++++p++v++tYeg+Hnh+ XP_010536182.1 122 LDDGYKWRKYGKKMVKNSKYPRNYYKCSVDGCPVKKRVERDRDEPSFVITTYEGSHNHS 180 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.5E-33	108	181	IPR003657	WRKY domain
SuperFamily	SSF118290	4.18E-28	115	180	IPR003657	WRKY domain
PROSITE profile	PS50811	28.805	117	182	IPR003657	WRKY domain
SMART	SM00774	1.1E-35	122	181	IPR003657	WRKY domain
Pfam	PF03106	3.8E-25	123	179	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MSRSEEDIGR MNLARSFSNE TQFGFELSEL CLSEEWMDDD LASVVSGQMQ QKMHHFDFGY 60 QASDVGSYER GSSSNNIPEI PSTDTSYTTA AAANGNENET KKEKKTVKER VAFKTQSEVE 120 VLDDGYKWRK YGKKMVKNSK YPRNYYKCSV DGCPVKKRVE RDRDEPSFVI TTYEGSHNHS 180 SMH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-26	112	179	7	74	Probable WRKY transcription factor 4
2lex_A	2e-26	112	179	7	74	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00531	DAP	Transfer from AT5G26170	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010536182.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010536182.1	1e-137	PREDICTED: probable WRKY transcription factor 50
Swissprot	Q8VWQ5	8e-70	WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBL	C0SVQ6	2e-67	C0SVQ6_ARATH; Uncharacterized protein At5g26170 (Fragment)
STRING	XP_010536182.1	1e-136	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6121	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	1e-64	WRKY DNA-binding protein 50

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821]