PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010536082.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 694aa    MW: 75902.3 Da    PI: 7.5524
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010536082.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73.1e-06303323526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++f + GtCk+ d C +aHg
  XP_010536082.1 303 PCPDFKK-GTCKRADMCEYAHG 323
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484035.75E-1644163IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.4E-1684164IPR020683Ankyrin repeat-containing domain
SMARTSM002480.008584114IPR002110Ankyrin repeat
PROSITE profilePS5029715.37984160IPR020683Ankyrin repeat-containing domain
PfamPF127961.6E-984152IPR020683Ankyrin repeat-containing domain
CDDcd002044.72E-1484162No hitNo description
SMARTSM002482.0E-4119151IPR002110Ankyrin repeat
PROSITE profilePS5008811.22119154IPR002110Ankyrin repeat
SMARTSM003562.8E-4298324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.643303325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-5331361IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.024333357IPR000571Zinc finger, CCCH-type
SMARTSM0035656333356IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MYDVLDELNS GNNSTSLSEQ ESESLAKTTM DSSIDSDCSF SALLEFAADN DVEGFKSHLS  60
DVSCINKIGL WYARRRFLRK MVVEHRTPLM VAATYGSVDV VKLIISFREV DLNLRCVPDK  120
STALHCAAAG ASVNSAEVVK LLLNAGADPS IPDAHGNRPV DVLSVSRLVP SSKTILEEIL  180
KKDGPISEDL NASSSSLGSS FRSRSSSPDN VSSLLSSDSV LSPTKPNGAD GPFVSEKKEY  240
PIDPSLPDIK SGIYSTDEFR MFSFKIRPCS RAYSHDWTEC PFAHPGENAT RRDPRKFHYT  300
CVPCPDFKKG TCKRADMCEY AHGVFECWLH PAQYKTRLCK DGMSCNRRVC FFAHTNEELR  360
PLYASTGSGL PSPRASSGMD MASVLNMLPG SPSAIQHSFT HPMSPSGNGM PHSSMAWPQQ  420
NMPTLHLSGS NLQLSRLRSS LNARDIPVEE LRMLQDFEMQ RQKQQLLGDA SSPRFMNHSG  480
RPKSLAPSNL DEFFSSELSS PRFSDQLAGS SILSPSHKSA LLNQLQNKQS MLSPIKTNLM  540
SPKKNVEHPL FQATFGVSSS PGKMSPRAVE PISPMNSRLA SLSLRDRPQV HSRSLSSREL  600
GSSLSSADVG SPLSPWSRWD QSKGSGNDNV DWSVHSDELC VLRKSHSLAN PFSEADGPWV  660
QPRNIRATNP GGGRAGQEGS SRGSDAINAW LEQV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010536082.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010536082.10.0PREDICTED: zinc finger CCCH domain-containing protein 56
RefseqXP_010536083.10.0PREDICTED: zinc finger CCCH domain-containing protein 56
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLE4MVH50.0E4MVH5_EUTHA; mRNA, clone: RTFL01-01-B13
TrEMBLV4KTE70.0V4KTE7_EUTSA; Uncharacterized protein
STRINGXP_010536082.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.10.0CCCH-type zinc finger protein with ARM repeat domain