PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010536057.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 350aa    MW: 39077.2 Da    PI: 8.8976
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010536057.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.4e-12285330655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR +i +++ +L++l+P+     +k  + a++L +Av++Ik+Lq
  XP_010536057.1 285 SIAERVRRTKISERMKKLQDLVPNM----DKQTNTADMLDLAVDHIKDLQ 330
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.015279329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-16282343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.97E-11283334No hitNo description
Gene3DG3DSA:4.10.280.105.4E-14284340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-13285335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-9285330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MESDFQHTRY HLRDNHHKQP NSGLTRYQSA PSSYFSSFLD AGDGVGDEFL FRPPSPETER  60
IFQKFLESTE ELTEPMEVKL EREEQAPLPP PPPIPQLQPE KHNSFQGFHQ QQMQNQKQGE  120
IPGMGFGAAA TASAGMKRLP PQPPSAAAAA DVSSLIRHSS SPAGLFNSIN VENDYIPMRG  180
SGDLGDSKAK IESLFASKPP PSPKIPDLRK QSSFGANDRR TLSGGFHLPE TKNLDGVNRL  240
SRLSHHLSLP KSLSEMSEIE KILQLSDSVP CKIRAKRGCA THPRSIAERV RRTKISERMK  300
KLQDLVPNMD KQTNTADMLD LAVDHIKDLQ ERLRILQEDR ARCTCSSVKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010536057.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010536058.10.0PREDICTED: transcription factor bHLH122
RefseqXP_010536059.10.0PREDICTED: transcription factor bHLH122
SwissprotQ9C6904e-82BH122_ARATH; Transcription factor bHLH122
TrEMBLA0A2K2BA982e-93A0A2K2BA98_POPTR; Uncharacterized protein
STRINGXP_010536057.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105472632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.13e-69bHLH family protein
Publications ? help Back to Top
  1. Yang Z, et al.
    Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.
    Mol. Cell Proteomics, 2013. 12(12): p. 3559-82
    [PMID:24043427]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Takahashi Y,Kinoshita T,Matsumoto M,Shimazaki K
    Inhibition of the Arabidopsis bHLH transcription factor by monomerization through abscisic acid-induced phosphorylation.
    Plant J., 2016. 87(6): p. 559-67
    [PMID:27227462]
  4. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  5. Takahashi Y,Ebisu Y,Shimazaki KI
    Reconstitution of Abscisic Acid Signaling from the Receptor to DNA via bHLH Transcription Factors.
    Plant Physiol., 2017. 174(2): p. 815-822
    [PMID:28438792]