PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010536055.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | FAR1 | ||||||||
Protein Properties | Length: 753aa MW: 87027.5 Da PI: 7.5391 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 83.6 | 3.2e-26 | 29 | 114 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++ +g+w+v++++++HnHel p XP_010536055.1 29 FYKEYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGSKQQSDDA----INPRPSPKIGCKASMHVKRRPNGRWYVYSFVKDHNHELLP 114 9****************************************99887....9************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.1E-24 | 29 | 114 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.8E-26 | 227 | 319 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.596 | 507 | 543 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.1E-7 | 516 | 541 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 3.9E-7 | 518 | 545 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 753 aa Download sequence Send to blast |
MDLGDSPGSV ISEPRPEMEF DTHEDAYLFY KEYAKSVGFG TAKLSSRRSR ASKEFIDAKF 60 SCIRYGSKQQ SDDAINPRPS PKIGCKASMH VKRRPNGRWY VYSFVKDHNH ELLPDQAHFF 120 RSHRNTDPLK SDARFRRKKN VSAVSKLFSA YQNLDFLDCY ARNQHDKGRH LVLQSGDAQY 180 LLEFFMCMQE ENPKFFYAID FSEDHRLRNV FWVDAKGVED YRSCSDVVSF DTTYFVNKYE 240 VPLVLFVGVN HHVQQVLLGC GLIADDTVYT YAWLMQTWLM AMNDQAPKVM LTDQNNSIKA 300 AVAALFPETR HCFCLWYVLE RLPRNLDYWS LWEDAFTKKF YKCIYRSWTE EEFERRWLKL 360 LEKFHLREVQ WMRSLYEERK YWAPTFMKGI TFAGLSTPHR SESLNSVFDR YIKDDSSLRG 420 ILGQYKLILE DMYEEEAKAS FDAWHEVPQL KSPSPFEKQI SLIYTHEIFK KFQLEVLGAA 480 ACHLKKESEN EAAATYSVKD FEDDQKYLVE WNESRSDILC SCRSFEYKGY LCRHAIVVLQ 540 MSGVFSIPTN YVLQRWTNAA KFRHGISENL DEVQSNIRRF NDLCRRAIIL GEEGSLSQES 600 YDLALLAIKE GLRQCAIKTN NIEDQTRSGE PTIQAGYPVQ EENERGSASK EKATDPKPNN 660 MSSAETRREK KGSQSNVLKK AKVSCPFVQH VPQCGAVGAG SQEGFQQLAS PRPLQVVIPG 720 QFHNTIPSVF QNVIPAEFQN VRPTNIHSGN PSP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010536055.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010536055.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 | ||||
Refseq | XP_019057840.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 | ||||
Swissprot | Q6NQJ7 | 0.0 | FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4 | ||||
TrEMBL | A0A087HIV3 | 0.0 | A0A087HIV3_ARAAL; Uncharacterized protein | ||||
STRING | XP_010536055.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM118 | 26 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76320.1 | 0.0 | FAR1-related sequence 4 |
Publications ? help Back to Top | |||
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