PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010536019.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 467aa    MW: 52566.4 Da    PI: 7.4221
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010536019.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.6e-05354377123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y+Cp+C++ F ++  +  H+ + H
  XP_010536019.1 354 YTCPKCNTLFDTSQKFAAHMVSvH 377
                     9*******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.328354382IPR007087Zinc finger, C2H2
PROSITE patternPS000280356377IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0090057Biological Processroot radial pattern formation
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MSLPSLPPVD MPFNMPSNQN VFSSRGDEPF DFAVLSHLNQ SLVTNQMNAH QPMFLHNSQM  60
SRSFDYLSSN NHVAYANIST FSKQEPNGNM VLSSCSSSSS SSSSPIIFSQ NPRGFPSLGP  120
NNQFELGRRM AQHMRRNIVS ISPPRTQVSS FVDYSPIKDN PNMTRVSITE TITKQYSAVI  180
PASSVIPIQN DIQRVKRALA CESSIWHSPS NDLSSSQNVI GEQSIDDDRA NLRPEILTAE  240
PLSTVFPQGI NQNHRPWPQR ETKPDNLSSR SHKDPIYPES LNPSSAPPDN RDKRKSSRGF  300
RSEPSRGKKA RPSKKIEDIV GYFFNYSEEE DGYEDDDAYD GRTHSLPYAK YGPYTCPKCN  360
TLFDTSQKFA AHMVSVHYKN ETGKEKRKRL RARYKKQFRQ LNLEVPGVKH DVSGPLEAEK  420
EIKKTDLEVE KEERVAGEEE EDAAASSKGT RDGDGFLHDV VVKQELM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1385395KRKRLRARYKK
2386392RKRLRAR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010536019.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010536019.10.0PREDICTED: uncharacterized protein LOC104811119
STRINGXP_010536019.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18490.11e-48C2H2-like zinc finger protein