PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010535608.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 841aa    MW: 92122.9 Da    PI: 6.1481
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010535608.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.9e-182583357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR ++k+
  XP_010535608.1 25 KYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCRDKQ 83
                    56789***************************************************996 PP
2START160.71.1e-501623692204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+ +sg a+ra+g+v  +++   +e+l+d+  W +++++ e+      g  g+++l 
  XP_010535608.1 162 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQRCSGVAARACGLVSLEPP-KIAEILKDRSSWFRDCRSLEVFTMFPAGtgGTIELV 255
                     7899******************************************************.6666777766**********9999999999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++a+++l+p Rdf+++Ry+ +l+ g++v++++S++ +   p+    +++vRae+lpSg+li+p+++g+s +++v+h +l++++++ +lr+l+
  XP_010535608.1 256 YMQTYAPTTLAPaRDFWTLRYTTSLENGSLVVCERSLSGTGAGPNaasAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPDVLRPLY 350
                     *****************************************999999999********************************************* PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s+ a ++k++ a+l++ +
  XP_010535608.1 351 ESCKAIAQKMTIAALRYIR 369
                     **************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3052084IPR001356Homeobox domain
SuperFamilySSF466892.99E-162186IPR009057Homeodomain-like
SMARTSM003899.5E-162288IPR001356Homeobox domain
CDDcd000866.21E-162585No hitNo description
PfamPF000461.4E-152683IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-182783IPR009057Homeodomain-like
CDDcd146866.70E-677116No hitNo description
PROSITE profilePS5084825.682152380IPR002913START domain
CDDcd088759.10E-70156372No hitNo description
SuperFamilySSF559618.24E-34161373No hitNo description
Gene3DG3DSA:3.30.530.202.2E-18161365IPR023393START-like domain
SMARTSM002349.8E-42161371IPR002913START domain
PfamPF018523.1E-48162369IPR002913START domain
PfamPF086703.9E-49694840IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MAMAVANHRE RSSDSMNKHL DSSGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECP  60
ILSNIEPKQI KVWFQNRRCR DKQRKESSRL QSVNRKLSAM NKLLMEENDR LQKQVSQLVC  120
ENGYMKQQLH TVQVTDASCD SVVTTPQHSI RDPNSPAGLL SIAEETLAEF LSKATGTAVD  180
WVQMPGMKPG PDSVGIFAIS QRCSGVAARA CGLVSLEPPK IAEILKDRSS WFRDCRSLEV  240
FTMFPAGTGG TIELVYMQTY APTTLAPARD FWTLRYTTSL ENGSLVVCER SLSGTGAGPN  300
AASAAQFVRA EMLPSGYLIR PCEGGGSIIH IVDHLNLEAW SVPDVLRPLY ESCKAIAQKM  360
TIAALRYIRQ IAQETNGEVV YGLGRQPAVL RAFSQRLSRG FNDAVNGFND DGWSVMHCDG  420
AEDIIVTVNS TKHLDNVSNP LSFLGGVLCA KASMLLQNVP PAVLVRFLRE HRSEWADFNV  480
DAYSAATLKA GTYGYPGMRP TRFTGSQIIM PLGHTIEHEE MLEVVRLEGH SLVQDDAFVS  540
RDVHLLQICT GIDENAVGAC SELVFAPINE MFPDDAPLVP SGFRVIPVDA KTGDGQDLLA  600
ANRTLDLTSS LEVGPASENS SGNPTTSSSS RSILTIAFQF PFETNLQENV ATMACQYVRS  660
VISSVQRVAM AISPSGSNPS FGSKLSPGSP EAVTLAQWIC HSYTRHFGSE LLSSDSLGDG  720
SVLKHLWQHQ DAILCCSLKP QPVFMFANQA GLDMLETTLV ALQDITLDKI FDESGRKALC  780
ADFAKLMQQG FACLPAGICV STMGRNVSYE QAVSWKVFAA PSEDNNVVHC LAFLFVNWSF  840
V
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010535608.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010535608.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A178UL040.0A0A178UL04_ARATH; REV
STRINGXP_010535608.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]